[FCA] Malpighian tubule (10x, Relaxed)

Summary

Visualization

Analysis

2runs

Data

1LOOM files

Settings

Public project Shared with 0 users

Identity

5852wz

Project Name

[FCA] Malpighian tubule (10x, Relaxed)

TypeSingle-cell (or nucleus) transcriptomics

Origin

New project

Activity

CreatedJun 11, 2021

UpdatedMar 10, 2026

Reproducibility

Instructions Commands Loom List (JSON)

Source repository links

ArrayExpress Experiment

Identifier	Title	Other identifiers	Contributors
E-MTAB-10519	The Fly Cell Atlas: single-cell transcriptomes of the entire adult Drosophila - 10x dataset		Maxime De WaegeneerJanssens JasperLi HongjieAerts Stein

Downloaded from Fly Cell Atlas

Publications

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

H Li et al.

Details

LOOM file	Run	Embedding	Created by	Created
Parsing	Parsing #1	Embedding_HVG_PC1_PC2	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_t_SNE	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_t_SNE	bbcf.epfl	Jun 11, 2021

Metadata

Cluster/category	Label	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
13	adult tracheocyte	ect vvl Nplp4 Gasp sano trh	-	+3 / -0	bbcf.epfl	May 30, 2022
11	adult oenocyte	FASN2 salm	-	+2 / -0	bbcf.epfl	May 30, 2022
8	adult hindgut	-	-	+1 / -0	bbcf.epfl	May 30, 2022
7	adult fat body	AkhR CG34166 apolpp CG6415 CG14990	-	+2 / -0	bbcf.epfl	May 30, 2022
4	adult Malpighian tubule principal cell of lower ureter	Chs2	-	+1 / -0	bbcf.epfl	May 30, 2022
3	adult Malpighian tubule principal cell of lower segment	upd3 Alp4	-	+2 / -0	bbcf.epfl	May 30, 2022
2	adult Malpighian tubule principal cell of initial segment	Best2 CG16762	-	+2 / -0	bbcf.epfl	May 30, 2022
1	adult Malpighian tubule principal cell	Irk1 CapaR Dh31-R Eglp2 Eglp4	-	+1 / -0	bbcf.epfl	May 30, 2022
37	subset of tubule principal cells	Irk1 Dh31-R wtrw	-	+1 / -0	bbcf.epfl	May 30, 2022
15	? subset of principal cells?	Uro	-	+1 / -0	bbcf.epfl	May 30, 2022
16	midgut	Jon44E Ag5r2 CG10477 mag Jon65Ai	-	+1 / -0	bbcf.epfl	May 30, 2022
44	? midgut ?	Diedel3 CG34026 AANATL3 CG3841 Alp10	-	+1 / -0	bbcf.epfl	May 30, 2022
31	? unknown ?	-	-	+1 / -0	bbcf.epfl	May 30, 2022
18	possible posterior midgut	-	-	+1 / -0	bbcf.epfl	May 30, 2022
19	? tip cell ? neurons?	-	-	+1 / -0	bbcf.epfl	May 30, 2022
15	hemocyte	zfh1 vkg Ppn Hml Pxn	-	+2 / -0	bbcf.epfl	May 30, 2022
16	oenocyte	FASN2 salm	-	+2 / -0	bbcf.epfl	May 30, 2022
16	fat body	CG17562 CG17560 FASN3 CG6660 FASN2	-	+1 / -2	bbcf.epfl	May 30, 2022
14	hindgut	-	-	+1 / -0	bbcf.epfl	May 30, 2022
21	visceral muscle	Mhc CG45076 Mf up bt	-	+3 / -0	bbcf.epfl	May 30, 2022
12	fat body	AkhR CG34166 apolpp CG6415 CG14990	-	+2 / -0	bbcf.epfl	May 30, 2022
11	tracheal system	ect vvl Nplp4 Gasp sano trh	-	+3 / -0	bbcf.epfl	May 30, 2022
0	adult Malpighian tubule bar-shaped cell of initial segment	tsh Doc1 Lkr Doc2	-	+2 / -0	bbcf.epfl	May 30, 2022
9	adult Malpighian tubule principal cell of lower ureter	Chs2	-	+1 / -0	bbcf.epfl	May 30, 2022
8	adult Malpighian tubule principal cell of lower segment	upd3 Alp4	-	+1 / -0	bbcf.epfl	May 30, 2022
19	salivary gland	sage sens 5-HT7 yellow-d 5-HT2A CG33109 LysP Sox21b pio	-	+1 / -0	bbcf.epfl	May 30, 2022
6	? salivary gland ?	sens 5-HT7 CG32198 alpha-Man-Ic yellow-d 5-HT2A LysP Sox21b	-	+1 / -2	bbcf.epfl	May 30, 2022
5	adult Malpighian tubule principal cell of transitional segment	-	-	+1 / -0	bbcf.epfl	May 30, 2022
5	adult Malpighian tubule principal cell of initial segment	Best2 CG16762	-	+2 / -0	bbcf.epfl	May 30, 2022
6	adult Malpighian tubule stellate cell of main segment	Drip tsh ClC-a Prip Lkr SecCl	-	+2 / -0	bbcf.epfl	May 30, 2022
3	adult Malpighian tubule principal cell of main segment	CapaR Uro salt Eglp2 Eglp4	-	+1 / -0	bbcf.epfl	May 30, 2022
3	adult Malpighian tubule principal cell	Irk1 CapaR Dh31-R Eglp2 Eglp4	-	+1 / -0	bbcf.epfl	May 30, 2022
2	? Undefined / heterogeneous ?	-	-	+1 / -0	bbcf.epfl	May 30, 2022
12	adult renal stem cell	Sox21a Dl N esg	-	+2 / -0	bbcf.epfl	May 30, 2022
1	stem cell	E(spl)mbeta-HLH Sox21a Dl E(spl)m3-HLH N Df31 esg	-	+1 / -2	bbcf.epfl	May 30, 2022
0	adult Malpighian tubule principal cell of lower segment	-	-	+2 / -0	bbcf.epfl	May 30, 2022
tracheolar cell	tracheolar cell	-	-	+0 / -0	bbcf.epfl	May 26, 2022
somatic precursor cell	somatic precursor cell	-	-	+0 / -0	bbcf.epfl	May 26, 2022
oenocyte	oenocyte	-	-	+0 / -0	bbcf.epfl	May 26, 2022
muscle cell	muscle cell	-	-	+0 / -0	bbcf.epfl	May 26, 2022
gland	gland	-	-	+0 / -0	bbcf.epfl	May 26, 2022
fat cell	fat cell	-	-	+0 / -0	bbcf.epfl	May 26, 2022
excretory system	excretory system	-	-	+0 / -0	bbcf.epfl	May 26, 2022
epithelial cell	epithelial cell	-	-	+0 / -0	bbcf.epfl	May 26, 2022
20	unannotated	-	-	+1 / -0	bbcf.epfl	May 26, 2022
18	principal cell*	Uro	-	+1 / -0	bbcf.epfl	May 26, 2022
17	posterior midgut*	-	-	+1 / -0	bbcf.epfl	May 26, 2022
10	adult midgut*	Diedel3 CG34026 AANATL3 CG3841 Alp10	-	+1 / -0	bbcf.epfl	May 26, 2022
5	adult Malpighian tubule principal cell subtype	Irk1 Dh31-R wtrw	-	+1 / -0	bbcf.epfl	May 26, 2022
visceral muscle	visceral muscle	-	-	+0 / -0	bbcf.epfl	May 26, 2022
principal cell*	principal cell*	-	-	+0 / -0	bbcf.epfl	May 26, 2022
posterior midgut*	posterior midgut*	-	-	+0 / -0	bbcf.epfl	May 26, 2022
artefact	artefact	-	-	+0 / -0	bbcf.epfl	May 26, 2022
adult tracheal cell	adult tracheal cell	-	-	+0 / -0	bbcf.epfl	May 26, 2022
adult midgut*	adult midgut*	-	-	+0 / -0	bbcf.epfl	May 26, 2022
adult hindgut*	adult hindgut*	-	-	+0 / -0	bbcf.epfl	May 26, 2022
unannotated	unannotated	-	-	+0 / -0	bbcf.epfl	May 26, 2022
Manual Annotation	Manual Annotation	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005735	FBbt:00005735	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005040	FBbt:00005040	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00003209	FBbt:00003209	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00003185	FBbt:00003185	-	-	+0 / -0	bbcf.epfl	May 26, 2022
unannotated	unannotated	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00100317	FBbt:00100317	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00057011	FBbt:00057011	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00046052	FBbt:00046052	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00007008	FBbt:00007008	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005074	FBbt:00005074	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005063	FBbt:00005063	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005056	FBbt:00005056	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005048	FBbt:00005048	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00004995	FBbt:00004995	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00004864	FBbt:00004864	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00000124	FBbt:00000124	-	-	+0 / -0	bbcf.epfl	May 26, 2022
unannotated	unannotated	-	-	+0 / -0	bbcf.epfl	May 26, 2022
Manual Annotation	Manual Annotation	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00110862	FBbt:00110862	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00049478	FBbt:00049478	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00049477	FBbt:00049477	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00049474	FBbt:00049474	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00049472	FBbt:00049472	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00047102	FBbt:00047102	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005735	FBbt:00005735	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005070	FBbt:00005070	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005040	FBbt:00005040	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00003209	FBbt:00003209	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00003185	FBbt:00003185	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00003143	FBbt:00003143	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00003135	FBbt:00003135	-	-	+0 / -0	bbcf.epfl	May 26, 2022
Manual Annotation	Manual Annotation	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00046052	FBbt:00046052	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00007008	FBbt:00007008	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005074	FBbt:00005074	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005056	FBbt:00005056	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005048	FBbt:00005048	-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00000124	FBbt:00000124	-	-	+0 / -0	bbcf.epfl	May 26, 2022
15	? Crop or hindgut ?	scro dar1 CG15021	-	+1 / -0	bbcf.epfl	May 26, 2022
14	artefact	-	-	+1 / -0	bbcf.epfl	May 26, 2022
9	adult hindgut*	scro dar1 CG15021	-	+1 / -0	bbcf.epfl	May 26, 2022

Go back to project's annotations

Project key	Metadata name	Cluster/category	Label	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

[FCA] Malpighian tubule (10x, Relaxed) ASAP36 v5

Summary

ArrayExpress Experiment

Details