[FCA] Body (10x, Relaxed)

Summary

Visualization

Analysis

2runs

Data

1LOOM files

Settings

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Identity

wqr487

Project Name

[FCA] Body (10x, Relaxed)

TypeSingle-cell (or nucleus) transcriptomics

Origin

New project

Activity

CreatedJun 11, 2021

UpdatedMar 10, 2026

Reproducibility

Instructions Commands Loom List (JSON)

Source repository links

ArrayExpress Experiment

Identifier	Title	Other identifiers	Contributors
E-MTAB-10519	The Fly Cell Atlas: single-cell transcriptomes of the entire adult Drosophila - 10x dataset		Maxime De WaegeneerJanssens JasperLi HongjieAerts Stein

Downloaded from Fly Cell Atlas

Publications

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

H Li et al.

Details

LOOM file	Run	Embedding	Created by	Created
Parsing	Parsing #1	Embedding_HVG_PC1_PC2	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_t_SNE	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_t_SNE	bbcf.epfl	Jun 11, 2021

Metadata

Cluster/category	Label	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
31	scolopidial neuron		fd3F Dnai2 nan iav ktub nompC Dnah3	-	+2 / -0	bbcf.epfl	May 30, 2022
29	polar follicle cell		upd1 upd3 cas	-	+1 / -0	bbcf.epfl	May 30, 2022
27	muscle cell		Mhc TpnC41C TpnC73F	-	+1 / -0	bbcf.epfl	May 30, 2022
26	multidendritic neuron		kn ct ppk ppk26	-	+1 / -0	bbcf.epfl	May 30, 2022
25	male accessory gland		CAH16 lncRNA:TS14	-	+4 / -0	bbcf.epfl	May 30, 2022
24	leg taste bristle chemosensory neuron		ppk23 Ir76b	-	+2 / -0	bbcf.epfl	May 30, 2022
23	leg muscle motor neuron		tup HGTX Lim3 rhea twit VGlut Proc	-	+1 / -0	bbcf.epfl	May 30, 2022
20	gustatory receptor neuron		Ir76b	-	+3 / -0	bbcf.epfl	May 30, 2022
19	germline cell		vas	-	+1 / -0	bbcf.epfl	May 30, 2022
17	follicle cell		dec eya tj Fas2 Fas3	-	+2 / -0	bbcf.epfl	May 30, 2022
15	escort cell		ptc fz3 fax Wnt4 CG9674 GstS1	-	+1 / -0	bbcf.epfl	May 30, 2022
14	epithelial cell		grh	-	+1 / -0	bbcf.epfl	May 30, 2022
11	cell body glial cell		repo zyd	-	+1 / -0	bbcf.epfl	May 30, 2022
9	adult ventral nervous system		nAChRalpha7 tipE nAChRalpha1 Sh	-	+3 / -0	bbcf.epfl	May 30, 2022
8	adult tracheocyte		btl trh	-	+1 / -0	bbcf.epfl	May 30, 2022
6	adult peripheral nervous system		nSyb Syt1 elav	-	+2 / -0	bbcf.epfl	May 30, 2022
5	adult oenocyte		FASN3 FASN2 LpR1	-	+2 / -0	bbcf.epfl	May 30, 2022
4	adult hindgut		-	-	+1 / -0	bbcf.epfl	May 30, 2022
3	adult glial cell		Eaat1 repo	-	+1 / -0	bbcf.epfl	May 30, 2022
2	adult fat body		AkhR	-	+4 / -0	bbcf.epfl	May 30, 2022
0	CNS surface associated glial cell		-	-	+1 / -0	bbcf.epfl	May 30, 2022
556	multidendritic neuron	-	kn ct ppk ppk26	-	+1 / -0	bbcf.epfl	May 30, 2022
409	male accessory gland	-	CAH16 lncRNA:TS14	-	+1 / -0	bbcf.epfl	May 30, 2022
120	test		-	-	+0 / -1	bbcf.epfl	May 30, 2022
37	test		sens	-	+1 / -1	bbcf.epfl	May 30, 2022
54	follicle cell		dec	-	+1 / -0	bbcf.epfl	May 30, 2022
115	leg muscle motor neuron		tup HGTX Lim3 rhea twit VGlut Proc	-	+1 / -0	bbcf.epfl	May 30, 2022
76	scolopidial neuron		nan iav nompC	-	+1 / -0	bbcf.epfl	May 30, 2022
120	test		-	-	+1 / -1	bbcf.epfl	May 30, 2022
101	neurosecretory neuron		dimm nSyb AstA Syt1 NPF elav brp AstC Orcokinin Tk	-	+1 / -0	bbcf.epfl	May 30, 2022
12	enteroendocrine cell		dimm AstA NPF AstC Tk	-	+1 / -0	bbcf.epfl	May 30, 2022
94	hindgut		-	-	+1 / -0	bbcf.epfl	May 30, 2022
37	adult adipose system		-	-	+3 / -0	bbcf.epfl	May 30, 2022
32	oenocyte		FASN3 FASN2 LpR1	-	+2 / -0	bbcf.epfl	May 30, 2022
22	adult adipose system		-	-	+3 / -0	bbcf.epfl	May 30, 2022
7	potential doublets of germline cells and chorionic follicle cells		dec Vm26Ab psd Vm32E vas tj	-	+1 / -0	bbcf.epfl	May 30, 2022
7	follicle cell (FBbt:00004904), choriogenic		dec Vm26Ab psd Vm32E	-	+0 / -0	bbcf.epfl	May 30, 2022
33	subperineurial glial cell		moody Mdr65 repo Gli	-	+1 / -0	bbcf.epfl	May 30, 2022
62	escort cell		-	-	+1 / -0	bbcf.epfl	May 30, 2022
9	adult ventral nervous system		-	-	+1 / -0	bbcf.epfl	May 30, 2022
50	scolopidial neuron		fd3F Dnai2 ktub nompC Dnah3	-	+1 / -0	bbcf.epfl	May 30, 2022
32	spermatocyte		dany kmg fest Rbp4	-	+2 / -0	bbcf.epfl	May 30, 2022
40	leg taste bristle chemosensory neuron		ppk23 Ir76b	-	+2 / -0	bbcf.epfl	May 30, 2022
25	glial cell		repo	-	+1 / -0	bbcf.epfl	May 30, 2022
25	perineurial sheath glial cell		Vmat repo	-	+0 / -1	bbcf.epfl	May 30, 2022
3	ventral nerve cord		nAChRbeta1 nSyb Syt1 nAChRbeta2 elav	-	+1 / -0	bbcf.epfl	May 30, 2022
25	oenocyte		-	-	+2 / -0	bbcf.epfl	May 30, 2022
22	cholinergic neuron		ChAT VAChT	-	+0 / -2	bbcf.epfl	May 30, 2022
28	perineurial glial sheath		Tret1-1 Ae2 apt Vmat CG4797 repo	-	+1 / -0	bbcf.epfl	May 30, 2022
14	cell body glial cell		repo zyd	-	+1 / -0	bbcf.epfl	May 30, 2022
12	cholinergic neuron		ChAT	-	+0 / -2	bbcf.epfl	May 30, 2022
30	Malpighian tubule Type I cell		Uro Dh31-R salt NaPi-T Irk3	-	+1 / -0	bbcf.epfl	May 30, 2022
29	neurosecretory neuron		dimm nSyb AstA Syt1 NPF elav brp AstC Orcokinin Tk	-	+1 / -0	bbcf.epfl	May 30, 2022
29	enteroendocrine cell		-	-	+2 / -0	bbcf.epfl	May 30, 2022
28	reticular neuropil associated glial cell		Eaat1 Gat alrm repo	-	+1 / -0	bbcf.epfl	May 30, 2022
26	glial cell		Eaat1 repo	-	+1 / -0	bbcf.epfl	May 30, 2022
25	male accessory gland		-	-	+4 / -0	bbcf.epfl	May 30, 2022
25	uterus		Acp63F Acp62F	-	+1 / -0	bbcf.epfl	May 30, 2022
21	hemocyte		Hml	-	+2 / -0	bbcf.epfl	May 30, 2022
13	eo support cell		sv Obp56d Obp19d	-	+1 / -0	bbcf.epfl	May 30, 2022
16	female reproductive system		Pcp	-	+1 / -0	bbcf.epfl	May 30, 2022
19	adult oenocyte		FASN2 Fad2	-	+1 / -0	bbcf.epfl	May 30, 2022
18	germline cell		vas	-	+1 / -0	bbcf.epfl	May 30, 2022
17	germline cell		vas	-	+1 / -0	bbcf.epfl	May 30, 2022
16	trachea		btl trh	-	+1 / -0	bbcf.epfl	May 30, 2022
14	CNS surface associated glial cell		-	-	+1 / -0	bbcf.epfl	May 30, 2022
13	adult hindgut		wat Abd-B to otp grh fkh	-	+0 / -1	bbcf.epfl	May 30, 2022
11	fat cell		AkhR	-	+1 / -0	bbcf.epfl	May 30, 2022
7	peripheral nervous system		nSyb Syt1 elav	-	+2 / -0	bbcf.epfl	May 30, 2022
6	somatic muscle		-	-	+1 / -0	bbcf.epfl	May 30, 2022
5	muscle cell		Mhc TpnC73F	-	+1 / -0	bbcf.epfl	May 30, 2022
22	indirect flight muscle		fln salm TpnC4	-	+1 / -0	bbcf.epfl	May 30, 2022
3	follicle cell		eya tj Fas2 Fas3	-	+1 / -0	bbcf.epfl	May 30, 2022
2	adult ventral nervous system		nAChRalpha7 tipE nAChRalpha1 Sh	-	+2 / -0	bbcf.epfl	May 30, 2022
1	somatic muscle		TpnC41C	-	+1 / -0	bbcf.epfl	May 30, 2022
0	adult epidermis		grh	-	+1 / -0	bbcf.epfl	May 30, 2022
FBbt:00005106	FBbt:00005106		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00004864	FBbt:00004864		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005106	FBbt:00005106		-	-	+0 / -0	bbcf.epfl	May 26, 2022
['FBbt:00047835', 'FBbt:00004910']	['FBbt:00047835', 'FBbt:00004910']		-	-	+0 / -0	bbcf.epfl	May 26, 2022
Manual Annotation	Manual Annotation		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00047841	FBbt:00047841		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005222	FBbt:00005222		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005040	FBbt:00005040		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00004904	FBbt:00004904		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00004052	FBbt:00004052		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00003361	FBbt:00003361		-	-	+0 / -0	bbcf.epfl	May 26, 2022
scolopidial neuron	scolopidial neuron		-	-	+0 / -0	bbcf.epfl	May 26, 2022
30	prefollicle cell/stalk follicle cell		eya zfh1 cas CG46339	-	+1 / -0	bbcf.epfl	May 26, 2022
18	follicle cell St. 9+		Sox14	-	+1 / -0	bbcf.epfl	May 26, 2022
follicle cell	follicle cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
adult ventral nervous system	adult ventral nervous system		-	-	+0 / -0	bbcf.epfl	May 26, 2022
7	adult reticular neuropil associated glial cell		Eaat1 Gat alrm repo	-	+1 / -0	bbcf.epfl	May 26, 2022
1	adult Malpighian tubule Type I cell		Uro Dh31-R salt NaPi-T Irk3	-	+1 / -0	bbcf.epfl	May 26, 2022
subperineurial glial cell	subperineurial glial cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
spermatocyte	spermatocyte		-	-	+0 / -0	bbcf.epfl	May 26, 2022
scolopidial neuron	scolopidial neuron		-	-	+0 / -0	bbcf.epfl	May 26, 2022
prefollicle cell/stalk follicle cell	prefollicle cell/stalk follicle cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
polar follicle cell	polar follicle cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
perineurial glial sheath	perineurial glial sheath		-	-	+0 / -0	bbcf.epfl	May 26, 2022
muscle cell	muscle cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
multidendritic neuron	multidendritic neuron		-	-	+0 / -0	bbcf.epfl	May 26, 2022
male accessory gland	male accessory gland		-	-	+0 / -0	bbcf.epfl	May 26, 2022
leg taste bristle chemosensory neuron	leg taste bristle chemosensory neuron		-	-	+0 / -0	bbcf.epfl	May 26, 2022
leg muscle motor neuron	leg muscle motor neuron		-	-	+0 / -0	bbcf.epfl	May 26, 2022
indirect flight muscle	indirect flight muscle		-	-	+0 / -0	bbcf.epfl	May 26, 2022
gustatory receptor neuron	gustatory receptor neuron		-	-	+0 / -0	bbcf.epfl	May 26, 2022
germline cell	germline cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
follicle cell St. 9+	follicle cell St. 9+		-	-	+0 / -0	bbcf.epfl	May 26, 2022
follicle cell	follicle cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
female reproductive system	female reproductive system		-	-	+0 / -0	bbcf.epfl	May 26, 2022
escort cell	escort cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
epithelial cell	epithelial cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
eo support cell	eo support cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
enteroendocrine cell	enteroendocrine cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
cell body glial cell	cell body glial cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
adult ventral nervous system	adult ventral nervous system		-	-	+0 / -0	bbcf.epfl	May 26, 2022
adult tracheal cell	adult tracheal cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
adult reticular neuropil associated glial cell	adult reticular neuropil associated glial cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
adult peripheral nervous system	adult peripheral nervous system		-	-	+0 / -0	bbcf.epfl	May 26, 2022
adult oenocyte	adult oenocyte		-	-	+0 / -0	bbcf.epfl	May 26, 2022
adult hindgut	adult hindgut		-	-	+0 / -0	bbcf.epfl	May 26, 2022
adult glial cell	adult glial cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
adult fat body	adult fat body		-	-	+0 / -0	bbcf.epfl	May 26, 2022
CNS surface associated glial cell	CNS surface associated glial cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
neuron	neuron		-	-	+0 / -0	bbcf.epfl	May 26, 2022
unannotated	unannotated		-	-	+0 / -0	bbcf.epfl	May 26, 2022
['FBbt:00047835', 'FBbt:00004910']	['FBbt:00047835', 'FBbt:00004910']		-	-	+0 / -0	bbcf.epfl	May 26, 2022
Manual Annotation	Manual Annotation		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00100497	FBbt:00100497		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00049568	FBbt:00049568		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00047841	FBbt:00047841		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00047767	FBbt:00047767		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00007089	FBbt:00007089		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00007038	FBbt:00007038		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00006049	FBbt:00006049		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005927	FBbt:00005927		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005892	FBbt:00005892		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005222	FBbt:00005222		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005209	FBbt:00005209		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005074	FBbt:00005074		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005040	FBbt:00005040		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00004959	FBbt:00004959		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00004907	FBbt:00004907		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00004904	FBbt:00004904		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00004052	FBbt:00004052		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00003209	FBbt:00003209		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00003185	FBbt:00003185		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00001258	FBbt:00001258		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00000124	FBbt:00000124		-	-	+0 / -0	bbcf.epfl	May 26, 2022
unannotated	unannotated		-	-	+0 / -0	bbcf.epfl	May 26, 2022
tracheolar cell	tracheolar cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
sensory neuron	sensory neuron		-	-	+0 / -0	bbcf.epfl	May 26, 2022
oenocyte	oenocyte		-	-	+0 / -0	bbcf.epfl	May 26, 2022
neuron	neuron		-	-	+0 / -0	bbcf.epfl	May 26, 2022
muscle cell	muscle cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
male reproductive system	male reproductive system		-	-	+0 / -0	bbcf.epfl	May 26, 2022
male germline cell	male germline cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
hemocyte	hemocyte		-	-	+0 / -0	bbcf.epfl	May 26, 2022
glial cell	glial cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
gland	gland		-	-	+0 / -0	bbcf.epfl	May 26, 2022
germline cell	germline cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
female reproductive system	female reproductive system		-	-	+0 / -0	bbcf.epfl	May 26, 2022
female germline cell	female germline cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
fat cell	fat cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
epithelial cell	epithelial cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
artefact	artefact		-	-	+0 / -0	bbcf.epfl	May 26, 2022
unannotated	unannotated		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00100317	FBbt:00100317		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00057012	FBbt:00057012		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00057011	FBbt:00057011		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00046052	FBbt:00046052		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00007319	FBbt:00007319		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00007008	FBbt:00007008		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005144	FBbt:00005144		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005124	FBbt:00005124		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005106	FBbt:00005106		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005074	FBbt:00005074		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005063	FBbt:00005063		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005056	FBbt:00005056		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00005048	FBbt:00005048		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00004995	FBbt:00004995		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00004927	FBbt:00004927		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00004864	FBbt:00004864		-	-	+0 / -0	bbcf.epfl	May 26, 2022
FBbt:00000124	FBbt:00000124		-	-	+0 / -0	bbcf.epfl	May 26, 2022
unannotated	unannotated		-	-	+0 / -0	bbcf.epfl	May 26, 2022
tracheolar cell	tracheolar cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
sensory neuron	sensory neuron		-	-	+0 / -0	bbcf.epfl	May 26, 2022
oenocyte	oenocyte		-	-	+0 / -0	bbcf.epfl	May 26, 2022
neuron	neuron		-	-	+0 / -0	bbcf.epfl	May 26, 2022
muscle cell	muscle cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
male reproductive system	male reproductive system		-	-	+0 / -0	bbcf.epfl	May 26, 2022
male germline cell	male germline cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
glial cell	glial cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
gland	gland		-	-	+0 / -0	bbcf.epfl	May 26, 2022
germline cell	germline cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
female reproductive system	female reproductive system		-	-	+0 / -0	bbcf.epfl	May 26, 2022
female germline cell	female germline cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
excretory system	excretory system		-	-	+0 / -0	bbcf.epfl	May 26, 2022
epithelial cell	epithelial cell		-	-	+0 / -0	bbcf.epfl	May 26, 2022
10	artefact		dec Vm26Ab psd Vm32E vas tj	-	+1 / -0	bbcf.epfl	May 26, 2022

Go back to project's annotations

Project key	Metadata name	Cluster/category	Label	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

[FCA] Body (10x, Relaxed) ASAP23 v5

Summary

ArrayExpress Experiment

Details