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Info
Releases
Release notes & changelog
Project types
Available project types and their configurations
Cell ontologies
Ontology catalogs mirrored from legacy ASAP
Cell metadata schema
Cell metadata used by ASAP to annotate single-cell datasets
Cross-references
Identifier types and external database links
Atlases
FCA and HCA reference pages and entry points
Tutorials
Step-by-step guides for new users
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Supported upload and export formats
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Identity
[FCA] Ovary (10x, Relaxed)
Activity
Reproducibility
Source repository links
| Identifier | Title | Other identifiers | Contributors |
|---|---|---|---|
| E-MTAB-10519 | The Fly Cell Atlas: single-cell transcriptomes of the entire adult Drosophila - 10x dataset |
|
Maxime De WaegeneerJanssens JasperLi HongjieAerts Stein
|
Downloaded from Fly Cell Atlas
Publications
| LOOM file | Run | Embedding | Created by | Created |
|---|---|---|---|---|
| Parsing | Parsing #1 | Embedding_HVG_PC1_PC2 | bbcf.epfl | Jun 11, 2021 |
| Parsing | Parsing #1 | Embedding_HVG_UMAP | bbcf.epfl | Jun 11, 2021 |
| Parsing | Parsing #1 | Embedding_HVG_t_SNE | bbcf.epfl | Jun 11, 2021 |
| Parsing | Parsing #1 | Embedding_SCENIC_AUC_UMAP | bbcf.epfl | Jun 11, 2021 |
| Parsing | Parsing #1 | Embedding_SCENIC_AUC_t_SNE | bbcf.epfl | Jun 11, 2021 |
No checkpoints.
No comments.
| Cluster/category | Label | Cell set | Up-regulated genes | Down-regulated genes | Votes | Created by | Created |
|---|---|---|---|---|---|---|---|
| 20 | stretch follicle cell |
dpp
cv-2
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 13 | ovarian sheath muscle |
Mlp84B
Mlc2
Mhc
Act57B
Mlp60A
|
- | +2 / -0 | bbcf.epfl | May 30, 2022 | |
| 8 | escort cell | - | - | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 1 | adult tracheocyte |
vvl
wat
btl
trh
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 35 | Follicle stem cell and prefollicle cell |
eya
cas
sick
Wnt4
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 18 | potential doublets: germ cells and main body follicle cells |
orb
vas
tj
Fas3
|
- | +2 / -0 | bbcf.epfl | May 30, 2022 | |
| 55 | escort cell | - | - | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 19 | stalk follicle cell |
zfh1
drl
cas
CG46339
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 35 | Wnt4+ anterior germarial somatic cells (terminal filament, cap cells, escort cells) |
Wnt4
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 4 | central main body follicle cells ca. St. 6-8 |
mirr
br
Yp1
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 15 | polar follicle cell |
upd1
upd3
|
- | +2 / -0 | bbcf.epfl | May 30, 2022 | |
| 26 | potential germ cell - follicle cell doublets |
bru1
Yp1
|
- | +0 / -0 | bbcf.epfl | May 30, 2022 | |
| 20 | ovarian sheath muscle |
Mlp84B
Mlc2
Mhc
Act57B
Mlp60A
|
- | +2 / -0 | bbcf.epfl | May 30, 2022 | |
| 7 | young germ cells |
bam
vas
|
- | +2 / -0 | bbcf.epfl | May 30, 2022 | |
| 15 | stretch follicle cell |
dpp
cv-2
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 2 | main body follicle cell (FBbt:00005402) ca. until St.5 |
eya
CadN
Fas2
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 16 | muscle cell |
Mhc
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 21 | trachea |
vvl
wat
btl
trh
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 19 | post-mitotic nurse cells; endocycling |
CycE
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 18 | germ cells - maybe nurse cells? | - | - | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 18 | post-mitotic germ cells, early 16-cell cyst |
orb
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 7 | dorsal appendage forming follicle cell |
Ance
if
CG42867
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 15 | Germ cells stage 4 and later |
Rbfox1
|
- | +2 / -0 | bbcf.epfl | May 30, 2022 | |
| 15 | germ cells - later than 4-8 cell cysts | - | - | +1 / -2 | bbcf.epfl | May 30, 2022 | |
| 15 | female germline 4 - 8-cell cyst |
Rbfox1
|
- | +1 / -2 | bbcf.epfl | May 30, 2022 | |
| 13 | germ cells | - | - | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 13 | young germ cells 2 |
Sxl
ovo
Myc
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 9 | 16-cell germline cyst | - | - | +1 / -2 | bbcf.epfl | May 30, 2022 | |
| 9 | post-mitotic germ cell |
bru1
nos
orb
Rbfox1
CycE
Rbp9
|
- | +1 / -2 | bbcf.epfl | May 30, 2022 | |
| 14 | oviduct |
abd-A
vir-1
|
- | +2 / -0 | bbcf.epfl | May 30, 2022 | |
| 7 | choriogenic main body follicle cells and corpus luteum |
Diap1
Ilp8
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 2 | young germ cell |
bam
vas
|
- | +2 / -0 | bbcf.epfl | May 30, 2022 | |
| 0 | Possibly low quality cells (very low n_count compared to other clusters) | - | - | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 0 | potential germ cell - late stage follicle cell doublets |
bam
Cp18
Cp38
nos
Vm26Ab
Vm26Aa
vas
|
- | +1 / -0 | bbcf.epfl | May 30, 2022 | |
| 20 | posterior terminal follicle cell (FBbt:00048554) ca. St.5-8 |
mid
pnt
|
- | +1 / -0 | bbcf.epfl | May 26, 2022 | |
| 20 | germ cells, unknown stage |
bru1
orb
BigH1
pgc
|
- | +2 / -0 | bbcf.epfl | May 26, 2022 | |
| 16 | choriogenic main body follicle cells St. 14 |
CG31926
Acer
Femcoat
|
- | +1 / -0 | bbcf.epfl | May 26, 2022 | |
| 21 | young germ cell |
bam
Sxl
ovo
vas
Myc
|
- | +3 / -0 | bbcf.epfl | May 26, 2022 | |
| 18 | posterior terminal follicle cell ca. St. 5-8 |
mid
pnt
|
- | +1 / -0 | bbcf.epfl | May 26, 2022 | |
| 17 | post-mitotic germ cell early 16-cell cyst |
orb
|
- | +1 / -0 | bbcf.epfl | May 26, 2022 | |
| 16 | post-mitotic endocycling nurse cell |
CycE
|
- | +1 / -0 | bbcf.epfl | May 26, 2022 | |
| 12 | main body follicle cell ca. until St. 5 |
eya
CadN
Fas2
|
- | +1 / -0 | bbcf.epfl | May 26, 2022 | |
| 11 | germline cell, unknown stage |
bru1
orb
BigH1
pgc
|
- | +2 / -0 | bbcf.epfl | May 26, 2022 | |
| 10 | germ cell stage 4 and later |
Rbfox1
|
- | +2 / -0 | bbcf.epfl | May 26, 2022 | |
| 9 | follicle stem cell and prefollicle cell |
eya
cas
sick
Wnt4
|
- | +1 / -0 | bbcf.epfl | May 26, 2022 | |
| 6 | choriogenic main body follicle cell and corpus luteum |
Diap1
Ilp8
|
- | +1 / -0 | bbcf.epfl | May 26, 2022 | |
| 5 | choriogenic main body follicle cell St. 14 |
CG31926
Acer
Femcoat
|
- | +1 / -0 | bbcf.epfl | May 26, 2022 | |
| 4 | choriogenic main body follicle cell St. 12 |
yellow-g
senju
yellow-g2
|
- | +1 / -0 | bbcf.epfl | May 26, 2022 | |
| 3 | central main body follicle cell ca. St. 6-8 |
mirr
br
Yp1
|
- | +1 / -0 | bbcf.epfl | May 26, 2022 | |
| 0 | 16-cell germline cyst in germarium region 2a and 2b | - | - | +3 / -0 | bbcf.epfl | May 26, 2022 | |
| 2 | artefact |
bam
Cp18
Cp38
nos
Vm26Ab
Vm26Aa
orb
vas
tj
Fas3
|
- | +2 / -0 | bbcf.epfl | May 26, 2022 |
No annotations for this metadata.
| Project key | Metadata name | Cluster/category | Label | Cell set | Up-regulated genes | Down-regulated genes | Votes | Created by | Created |
|---|
No annotations found for this cell set.