[HCA] Liver Caudate Lobe (properly cell-filtered) v5 ASAP10
299,486 cells
H. sapiens
Pending Runs (0)
No runs available in this list.
Running Runs (0)
No runs available in this list.
Success Runs (29)
Gene Enrichment #6 - Fisher's Exact Test
almost 6 years ago
input_de:
Differential expr...
fdr_cutoff:
0.05
fc_cutoff:
2
gene_set_id:
2761
adj_method:
fdr
min:
15
max:
500
Gene Enrichment #5 - Fisher's Exact Test
almost 6 years ago
input_de:
Differential expr...
fdr_cutoff:
0.05
fc_cutoff:
2
gene_set_id:
2761
adj_method:
fdr
min:
15
max:
500
Gene Enrichment #4 - Fisher's Exact Test
almost 6 years ago
input_de:
Differential expr...
fdr_cutoff:
0.05
fc_cutoff:
2
gene_set_id:
2761
adj_method:
fdr
min:
15
max:
500
Gene Enrichment #3 - Fisher's Exact Test
almost 6 years ago
input_de:
Differential expr...
fdr_cutoff:
0.05
fc_cutoff:
2
gene_set_id:
2761
adj_method:
fdr
min:
15
max:
500
Gene Enrichment #2 - Fisher's Exact Test
almost 6 years ago
input_de:
Differential expr...
fdr_cutoff:
0.05
fc_cutoff:
2
gene_set_id:
2761
adj_method:
fdr
min:
15
max:
500
Gene Enrichment #1 - Fisher's Exact Test
almost 6 years ago
input_de:
Differential expr...
fdr_cutoff:
0.05
fc_cutoff:
2
gene_set_id:
2761
adj_method:
fdr
min:
15
max:
500
Differential expression #7 - Wilcoxon [Seurat]
almost 6 years ago
input_matrix:
Normalization #1 ...
groups:
1 datasets
all_against_compl:
false
group_pairs:
[]
group_ref:
4
group_comp:
min_pct:
0.1
min_diff_pct:
fc_threshold:
1.3
max_cells_per_ident:
Differential expression #6 - Wilcoxon [Seurat]
almost 6 years ago
input_matrix:
Normalization #1 ...
groups:
1 datasets
all_against_compl:
false
group_pairs:
[]
group_ref:
10
group_comp:
min_pct:
0.1
min_diff_pct:
fc_threshold:
1.3
max_cells_per_ident:
Differential expression #5 - Wilcoxon [Seurat]
almost 6 years ago
input_matrix:
Normalization #1 ...
groups:
1 datasets
all_against_compl:
false
group_pairs:
[]
group_ref:
20
group_comp:
min_pct:
0.1
min_diff_pct:
fc_threshold:
1.3
max_cells_per_ident:
Differential expression #4 - Wilcoxon [ASAP]
almost 6 years ago
input_matrix:
Normalization #1 ...
groups:
1 datasets
all_against_compl:
false
group_pairs:
[]
group_ref:
20
group_comp:
min_pct:
0.1
min_diff_pct:
fc_threshold:
1.3
max_cells_per_ident:
Differential expression #3 - Wilcoxon [ASAP]
almost 6 years ago
input_matrix:
Normalization #1 ...
groups:
1 datasets
all_against_compl:
false
group_pairs:
[]
group_ref:
10
group_comp:
min_pct:
0.1
min_diff_pct:
fc_threshold:
1.3
max_cells_per_ident:
Differential expression #1 - Wilcoxon [ASAP]
almost 6 years ago
input_matrix:
Normalization #1 ...
groups:
1 datasets
all_against_compl:
false
group_pairs:
[]
group_ref:
4
group_comp:
min_pct:
0.1
min_diff_pct:
fc_threshold:
1.3
max_cells_per_ident:
Clustering #2 - Seurat
almost 6 years ago
input_matrix:
Dimension reducti...
k:
20
resolution:
0.8
algorithm:
louvain
graph_type:
nn
Clustering #1 - Seurat
almost 6 years ago
input_matrix:
Dimension reducti...
k:
20
resolution:
0.8
algorithm:
louvain
graph_type:
snn
Dimension reduction #7 - t-SNE [scanpy]
almost 6 years ago
input_matrix:
Dimension reducti...
nber_dims:
3
perplexity:
30
early_exag:
12
learning_rate:
200
random_state:
0
Dimension reduction #6 - t-SNE [scanpy]
almost 6 years ago
input_matrix:
Dimension reducti...
nber_dims:
2
perplexity:
30
early_exag:
12
learning_rate:
200
random_state:
0
Dimension reduction #5 - t-SNE [Seurat, Rtsne]
almost 6 years ago
input_matrix:
Dimension reducti...
nber_dims:
3
perplexity:
30
theta:
0.5
Dimension reduction #4 - t-SNE [Seurat, Rtsne]
almost 6 years ago
input_matrix:
Dimension reducti...
nber_dims:
2
perplexity:
30
theta:
0.5
Dimension reduction #3 - UMAP
almost 6 years ago
input_matrix:
Dimension reducti...
nber_dims:
3
min_dist:
0.1
n_neighbors:
30
metric:
correlation
Dimension reduction #2 - UMAP
almost 6 years ago
input_matrix:
Dimension reducti...
nber_dims:
2
min_dist:
0.1
n_neighbors:
30
metric:
correlation
... and 9 more
Owned by bbcf.epfl
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