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Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution. ASAP131 v8

796 cells H. sapiens

Categorical Metadata

27
CO_Monitor_ppm
7 categories
Category Best annotation Cells
4
-
224
3
-
209
9
-
134
19
-
68
17
-
65
13
-
58
16
-
38
FEV1_FVC
7 categories
Category Best annotation Cells
81
-
207
83
-
190
88
-
149
73
-
79
89
-
68
84
-
65
78
-
38
assay
1 categories
Category Best annotation Cells
CEL-seq
-
796
assay_ontology_term_id
1 categories
Category Best annotation Cells
EFO:0008679
-
796
author_cell_types
14 categories
Category Best annotation Cells
Basal-2
-
191
Club (MUC5B High)
-
115
Perigoblet
-
98
Goblet
-
75
Cilia
-
71
T-cell
-
56
Club (Antigen Presenting)
-
50
Club (MUC5B Low)
-
44
Basal-1
-
27
Secretory Cell (BPIFA1)
-
27
Ionocyte
-
13
Deuterosomal
-
13
Unknown
-
11
Secretory Cell
-
5
cell_type
9 categories
Category Best annotation Cells
basal cell of epithelium of bronchus
-
218
club cell
-
209
lung secretory cell
-
130
bronchial goblet cell
-
75
multiciliated epithelial cell of the bronchus
-
71
T cell
-
56
pulmonary ionocyte
-
13
deuterosomal cell
-
13
respiratory tract epithelial cell
-
11
cell_type_ontology_term_id
9 categories
Category Best annotation Cells
CL:1000349
-
218
CL:0000158
-
209
CL:1000272
-
130
CL:1000312
-
75
CL:0002332
-
71
CL:0000084
-
56
CL:0017000
-
13
CL:4033044
-
13
CL:0002368
-
11
clusters
14 categories
Category Best annotation Cells
4.0
-
191
1.0
-
115
9.0
-
98
3.0
-
75
5.0
-
71
7.0
-
56
10.0
-
50
8.0
-
44
2.0
-
27
12.0
-
27
13.0
-
13
11.0
-
13
nan
-
11
6.0
-
5
counts_mix_mod
4 categories
Category Best annotation Cells
2.0
-
547
3.0
-
194
1.0
-
50
4.0
-
5
development_stage
11 categories
Category Best annotation Cells
25-year-old stage
-
133
43-year-old stage
-
79
34-year-old stage
-
79
49-year-old stage
-
74
26-year-old stage
-
72
24-year-old stage
-
70
27-year-old stage
-
68
35-year-old stage
-
65
50-year-old stage
-
60
44-year-old stage
-
58
51-year-old stage
-
38
development_stage_ontology_term_id
11 categories
Category Best annotation Cells
HsapDv:0000119
-
133
HsapDv:0000137
-
79
HsapDv:0000128
-
79
HsapDv:0000143
-
74
HsapDv:0000120
-
72
HsapDv:0000118
-
70
HsapDv:0000121
-
68
HsapDv:0000129
-
65
HsapDv:0000144
-
60
HsapDv:0000138
-
58
HsapDv:0000145
-
38
disease
1 categories
Category Best annotation Cells
normal
-
796
disease_ontology_term_id
1 categories
Category Best annotation Cells
PATO:0000461
-
796
donor_id
12 categories
Category Best annotation Cells
ECAPS 1061
-
79
ECAPS 1067
-
79
ECAPS 1074
-
75
ECAPS 1027
-
74
ECAPS 1069
-
72
ECAPS 1079
-
70
ECAPS 1072
-
68
ECAPS 1017
-
65
ECAPS 1082
-
60
ECAPS 1076
-
58
ECAPS 1085
-
58
ECAPS 1059
-
38
epithelial_or_WBC
2 categories
Category Best annotation Cells
Epithelial
-
753
WBC
-
43
is_primary_data
1 categories
Category Best annotation Cells
True
-
796
library_ID
12 categories
Category Best annotation Cells
4
-
79
5
-
79
8
-
75
2
-
74
6
-
72
10
-
70
7
-
68
1
-
65
11
-
60
9
-
58
12
-
58
3
-
38
pack_years
7 categories
Category Best annotation Cells
0.0
-
433
13.75
-
74
8.775
-
68
11.25
-
65
31.0
-
60
14.0
-
58
13.0
-
38
self_reported_ethnicity
1 categories
Category Best annotation Cells
unknown
-
796
self_reported_ethnicity_ontology_term_id
1 categories
Category Best annotation Cells
unknown
-
796
sex
2 categories
Category Best annotation Cells
female
-
421
male
-
375
sex_ontology_term_id
2 categories
Category Best annotation Cells
PATO:0000383
-
421
PATO:0000384
-
375
status
2 categories
Category Best annotation Cells
Never Smoker
-
433
Current Smoker
-
363
suspension_type
1 categories
Category Best annotation Cells
cell
-
796
tissue
1 categories
Category Best annotation Cells
epithelium of main bronchus
-
796
tissue_ontology_term_id
1 categories
Category Best annotation Cells
UBERON:0002340
-
796
tissue_type
1 categories
Category Best annotation Cells
tissue
-
796
CellID
observation_joinid

Continuous Metadata

15
_Depth
_Detected_Genes
_Mitochondrial_Content
_Protein_Coding_Content
_Ribosomal_Content
_StableID
chrM_reads
counts
counts_uncorrected
genes
mapped_reads
pc_counts
pc_genes
pc_thousands_counts
total_reads
Parsing > X_tsne 796 cells x 51'976 genes
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