[FCA] Trachea (10x, Relaxed) v5 ASAP25

30,003 cells D. melanogaster

Categorical Metadata

44
ClusterID
27 categories
Clustering_Annotation
12 categories
Clustering_Annotation__Stringent_
11 categories
Clustering_Broad_Annotation
9 categories
Clustering_Broad_Annotation_Extrapolated__Stringent_
17 categories
Clustering_Broad_Annotation__Stringent_
8 categories
Clustering_Leiden_resolution_0.4__default__362_
27 categories
Clustering_Leiden_resolution_0.6__10_
30 categories
Clustering_Leiden_resolution_0.8__28_
30 categories
Clustering_Leiden_resolution_1.0
32 categories
Clustering_Leiden_resolution_1.2
33 categories
Clustering_Leiden_resolution_1.4
35 categories
Clustering_Leiden_resolution_1.6
36 categories
Clustering_Leiden_resolution_1.8
40 categories
Clustering_Leiden_resolution_10.0
145 categories
Clustering_Leiden_resolution_2.0
42 categories
Clustering_Leiden_resolution_4.0
66 categories
Clustering_Leiden_resolution_6.0
92 categories
Clustering_Leiden_resolution_8.0
119 categories
S_annotation
11 categories
S_annotation__ontology_id
7 categories
S_annotation_broad
8 categories
S_annotation_broad__ontology_id
8 categories
S_annotation_broad_extrapolated
17 categories
S_annotation_broad_extrapolated__ontology_id
17 categories
age
1 categories
annotation
12 categories
annotation__ontology_id
7 categories
annotation_broad
9 categories
annotation_broad__ontology_id
8 categories
batch
2 categories
batch_id
1 categories
dissection_lab
1 categories
fca_id
2 categories
fly_genetics
1 categories
id
2 categories
leiden
27 categories
note
1 categories
sample_id
2 categories
scrublet__doublet_scores
247 categories
scrublet__predicted_doublets
1 categories
scrublet__predicted_doublets_based_on_10x_chromium_spec
1 categories
sex
2 categories
tissue
1 categories
CellID

Continuous Metadata

9
_Depth
_Detected_Genes
_Mitochondrial_Content
_Protein_Coding_Content
_Ribosomal_Content
_StableID
n_counts
n_genes
percent_mito
0 filters
General
Main plot

UMAP Plot

Select metadata from the dropdown to visualize

Controls: Click to pick a cell, click and drag to move a label, scroll to zoom

Gene Expression

-
Values from /layers/norm_1_asap_seurat
0 visible cells selected
No cell sets yet