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[HCA] Brain Neural Cells ASAP8 v5

156,936 cells H. sapiens

Categorical Metadata

53
Clustering (1)
148 categories
Category Best annotation Cells
1
-
82865
2
-
11054
3
-
6318
4
-
5483
5
-
4527
6
-
3933
7
-
3763
8
-
3513
9
-
3439
10
-
2869
11
-
2786
12
-
2561
70
-
2261
13
-
2095
14
-
1661
15
-
1644
16
-
1507
17
-
1439
18
-
1347
19
-
1143
20
-
1122
21
-
928
22
-
811
23
-
494
24
-
489
25
-
482
26
-
461
27
-
391
28
-
381
29
-
373
30
-
293
31
-
273
32
-
248
33
-
5
36
-
4
35
-
4
34
-
4
44
-
3
43
-
3
42
-
3
41
-
3
40
-
3
39
-
3
38
-
3
37
-
3
62
-
2
61
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2
63
-
2
60
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2
59
-
2
58
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2
57
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2
56
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2
55
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2
54
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2
53
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2
52
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2
51
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2
50
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2
49
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2
48
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2
47
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2
46
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2
64
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2
102
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2
103
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2
104
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2
105
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2
106
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2
107
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2
80
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2
108
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2
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2
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2
109
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2
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2
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2
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2
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2
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2
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67
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2
68
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2
69
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2
71
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2
72
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2
73
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2
74
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2
75
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2
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2
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2
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2
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2
100
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2
101
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2
123
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2
122
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2
121
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2
120
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2
99
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2
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2
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2
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2
129
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2
128
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2
127
-
2
126
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2
125
-
2
124
-
2
Clustering (2)
30 categories
Category Best annotation Cells
1
-
89689
2
-
15813
3
-
13342
4
-
11061
5
-
10134
6
-
7876
7
-
4266
8
-
461
9
-
370
10
-
149
21
-
2
20
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2
19
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2
18
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2
17
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2
16
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2
15
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2
14
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2
13
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2
12
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2
11
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2
30
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2
29
-
2
28
-
2
27
-
2
26
-
2
25
-
2
24
-
2
23
-
2
22
-
2
Clustering (3)
139 categories
Category Best annotation Cells
1
-
87963
2
-
11640
3
-
10992
4
-
5605
5
-
4237
6
-
3625
7
-
3617
8
-
3559
9
-
3372
10
-
2794
11
-
2793
12
-
2704
121
-
2423
13
-
2046
14
-
1392
15
-
938
16
-
851
17
-
781
18
-
458
19
-
371
20
-
352
21
-
273
22
-
170
26
-
4
25
-
4
24
-
4
23
-
4
30
-
3
31
-
3
29
-
3
28
-
3
27
-
3
125
-
2
45
-
2
46
-
2
47
-
2
48
-
2
49
-
2
50
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2
51
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2
52
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2
53
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2
54
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2
55
-
2
56
-
2
66
-
2
65
-
2
57
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2
58
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2
64
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2
59
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2
60
-
2
61
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2
62
-
2
63
-
2
87
-
2
86
-
2
85
-
2
84
-
2
83
-
2
109
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2
82
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2
108
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2
81
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2
80
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2
107
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2
106
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2
105
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2
104
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2
103
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2
102
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2
101
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2
100
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2
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2
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2
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2
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2
68
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2
67
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2
124
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2
123
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2
122
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2
120
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2
99
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2
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2
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2
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2
95
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2
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2
93
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2
119
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2
92
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2
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2
118
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2
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2
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2
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113
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2
110
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2
89
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2
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2
44
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2
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2
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2
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2
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2
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2
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2
32
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2
139
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2
138
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2
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2
136
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2
135
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2
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2
133
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2
132
-
2
131
-
2
130
-
2
129
-
2
128
-
2
127
-
2
126
-
2
Clustering (4)
137 categories
Category Best annotation Cells
1
-
85982
2
-
12829
3
-
11646
4
-
5767
5
-
4542
6
-
3620
7
-
3610
8
-
3548
9
-
3341
10
-
2848
11
-
2600
12
-
2573
109
-
2302
13
-
2051
14
-
1394
15
-
933
16
-
743
17
-
689
18
-
462
19
-
461
20
-
386
21
-
371
22
-
270
27
-
3
26
-
3
25
-
3
24
-
3
23
-
3
48
-
2
47
-
2
46
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2
45
-
2
49
-
2
44
-
2
50
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2
43
-
2
51
-
2
65
-
2
64
-
2
52
-
2
53
-
2
63
-
2
54
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2
62
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2
55
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2
61
-
2
60
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2
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2
58
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2
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2
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2
87
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2
86
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2
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2
84
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2
83
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2
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2
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2
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2
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2
102
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2
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2
100
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2
79
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2
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2
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2
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2
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2
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2
42
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2
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2
121
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2
120
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2
99
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2
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2
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2
95
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2
94
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2
93
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2
92
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2
119
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2
91
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2
118
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2
90
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2
117
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2
116
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2
115
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2
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2
113
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2
112
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2
111
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2
110
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2
89
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2
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2
41
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2
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2
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2
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2
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2
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2
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2
32
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31
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2
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2
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2
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2
133
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2
132
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2
131
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2
130
-
2
29
-
2
28
-
2
129
-
2
128
-
2
127
-
2
126
-
2
125
-
2
Clustering (5)
732 categories
Category Best annotation Cells
1
-
90282
2
-
11632
535
-
9291
3
-
4972
4
-
4529
5
-
3834
6
-
3625
7
-
3613
8
-
3385
9
-
3331
10
-
2786
11
-
2614
12
-
2052
13
-
1480
14
-
935
15
-
733
16
-
584
17
-
472
18
-
461
19
-
397
20
-
373
21
-
269
22
-
9
24
-
6
23
-
6
28
-
5
27
-
5
26
-
5
25
-
5
30
-
4
29
-
4
31
-
4
32
-
4
33
-
4
34
-
4
35
-
4
36
-
4
37
-
4
38
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4
39
-
4
40
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4
41
-
4
42
-
4
43
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4
44
-
4
45
-
4
73
-
3
100
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3
101
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3
102
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3
103
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3
104
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3
105
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3
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3
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3
109
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3
110
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3
115
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3
114
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3
113
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112
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3
111
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3
74
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3
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3
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3
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3
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3
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3
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3
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3
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3
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3
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3
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3
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3
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3
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3
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3
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554
-
2
676
-
2
313
-
2
434
-
2
555
-
2
435
-
2
314
-
2
677
-
2
556
-
2
678
-
2
315
-
2
436
-
2
557
-
2
427
-
2
669
-
2
428
-
2
307
-
2
549
-
2
308
-
2
429
-
2
309
-
2
670
-
2
671
-
2
550
-
2
551
-
2
430
-
2
672
-
2
552
-
2
310
-
2
431
-
2
673
-
2
432
-
2
683
-
2
684
-
2
321
-
2
200
-
2
442
-
2
563
-
2
201
-
2
322
-
2
443
-
2
685
-
2
564
-
2
202
-
2
686
-
2
323
-
2
444
-
2
565
-
2
324
-
2
203
-
2
445
-
2
437
-
2
316
-
2
679
-
2
558
-
2
559
-
2
438
-
2
317
-
2
318
-
2
439
-
2
319
-
2
680
-
2
681
-
2
560
-
2
440
-
2
561
-
2
682
-
2
441
-
2
320
-
2
562
-
2
524
-
2
410
-
2
652
-
2
532
-
2
411
-
2
653
-
2
654
-
2
412
-
2
533
-
2
413
-
2
534
-
2
655
-
2
645
-
2
656
-
2
414
-
2
657
-
2
415
-
2
536
-
2
658
-
2
416
-
2
525
-
2
404
-
2
646
-
2
526
-
2
405
-
2
647
-
2
527
-
2
406
-
2
648
-
2
528
-
2
407
-
2
649
-
2
529
-
2
408
-
2
409
-
2
650
-
2
530
-
2
651
-
2
531
-
2
422
-
2
664
-
2
665
-
2
302
-
2
423
-
2
544
-
2
545
-
2
303
-
2
424
-
2
666
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2
546
-
2
304
-
2
425
-
2
667
-
2
305
-
2
426
-
2
547
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2
668
-
2
306
-
2
537
-
2
538
-
2
417
-
2
659
-
2
539
-
2
418
-
2
419
-
2
660
-
2
661
-
2
540
-
2
420
-
2
541
-
2
662
-
2
421
-
2
300
-
2
542
-
2
663
-
2
301
-
2
543
-
2
582
-
2
466
-
2
224
-
2
644
-
2
345
-
2
587
-
2
522
-
2
588
-
2
225
-
2
467
-
2
346
-
2
589
-
2
226
-
2
347
-
2
468
-
2
401
-
2
227
-
2
348
-
2
469
-
2
643
-
2
220
-
2
341
-
2
462
-
2
583
-
2
463
-
2
221
-
2
342
-
2
403
-
2
584
-
2
464
-
2
402
-
2
222
-
2
343
-
2
585
-
2
223
-
2
523
-
2
344
-
2
465
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2
586
-
2
473
-
2
594
-
2
641
-
2
232
-
2
353
-
2
474
-
2
595
-
2
640
-
2
233
-
2
354
-
2
475
-
2
596
-
2
519
-
2
234
-
2
355
-
2
476
-
2
597
-
2
356
-
2
639
-
2
228
-
2
642
-
2
349
-
2
229
-
2
521
-
2
400
-
2
590
-
2
591
-
2
470
-
2
471
-
2
350
-
2
592
-
2
230
-
2
351
-
2
472
-
2
593
-
2
231
-
2
520
-
2
352
-
2
687
-
2
329
-
2
209
-
2
690
-
2
691
-
2
570
-
2
692
-
2
571
-
2
450
-
2
330
-
2
451
-
2
572
-
2
693
-
2
694
-
2
210
-
2
331
-
2
452
-
2
573
-
2
695
-
2
211
-
2
566
-
2
688
-
2
325
-
2
204
-
2
567
-
2
446
-
2
205
-
2
689
-
2
326
-
2
568
-
2
447
-
2
448
-
2
206
-
2
569
-
2
327
-
2
207
-
2
328
-
2
449
-
2
208
-
2
336
-
2
578
-
2
457
-
2
699
-
2
337
-
2
216
-
2
458
-
2
579
-
2
217
-
2
338
-
2
459
-
2
218
-
2
339
-
2
219
-
2
580
-
2
460
-
2
581
-
2
340
-
2
461
-
2
574
-
2
332
-
2
453
-
2
212
-
2
333
-
2
696
-
2
575
-
2
454
-
2
334
-
2
213
-
2
576
-
2
455
-
2
697
-
2
214
-
2
335
-
2
698
-
2
577
-
2
456
-
2
215
-
2
Clustering (6)
14 categories
Category Best annotation Cells
1
-
92665
2
-
15826
3
-
10802
4
-
10705
5
-
10419
6
-
7985
7
-
3797
8
-
462
9
-
372
10
-
160
11
-
2
12
-
2
13
-
2
14
-
2
Clustering (7)
30 categories
Category Best annotation Cells
14
-
13375
8
-
11078
13
-
10632
10
-
10365
25
-
8129
27
-
7620
18
-
6889
19
-
6841
6
-
6628
12
-
6027
24
-
5031
15
-
4993
30
-
4936
7
-
4886
22
-
4834
21
-
4784
11
-
4558
9
-
3729
5
-
3676
29
-
3567
4
-
3513
17
-
2688
26
-
2633
20
-
2597
1
-
2297
3
-
1984
23
-
1893
28
-
1371
16
-
1065
2
-
582
_dr_2_umap_2D.sel_1
2 categories
Category Best annotation Cells
0
-
152712
1
-
489
_dr_2_umap_2D.sel_2
2 categories
Category Best annotation Cells
0
-
153028
1
-
173
_dr_2_umap_2D.sel_3
2 categories
Category Best annotation Cells
0
-
152262
1
-
939
_dr_2_umap_2D.sel_4
2 categories
Category Best annotation Cells
0
-
152829
1
-
372
_dr_2_umap_2D.sel_5
2 categories
Category Best annotation Cells
0
-
152950
1
-
251
_dr_2_umap_2D.sel_6
2 categories
Category Best annotation Cells
1
-
110164
0
-
43037
analysis_protocol.protocol_core.protocol_id
2 categories
Category Best annotation Cells
optimus_v1.3.1
optimus_v1.3.1
133844
optimus_v1.3.2
3973dee6-ae7c-40e2-9efe-8ce5eb31ce1a
19357
analysis_protocol.provenance.document_id
6 categories
Category Best annotation Cells
a34b5f5b-c6de-4c1e-ab54-d1e58232b922
3e0828eb-087b-4924-a3d8-ae23c1131c71
36455
c1f32245-b732-4219-869a-9a6d44f9f3fd
a05f98a0-1748-4c86-8b00-7a9f648cc96b
35645
ca93a946-4c58-4cc9-bb48-8d6f9822cbbb
4c0fb68f-c6c9-4b5e-a2aa-ec9f2a453005.2019-07-26T222623.449355Z
21347
c944ce29-1f57-48ba-90e3-b5b95f661d46
b123a61b-7aa4-41b8-8f71-bbb89dc33678
20666
c5c73a09-8c0c-470d-9847-b71c9ea990ce
1e3daa7d-7ade-4c0f-b604-d79211ff5f38
19731
83af655a-7104-4860-9d7e-f9a34fe7deee
3973dee6-ae7c-40e2-9efe-8ce5eb31ce1a
19357
analysis_working_group_approval_status
1 categories
Category Best annotation Cells
blessed
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
bundle_uuid
6 categories
Category Best annotation Cells
d9313f14-d3ca-43d1-89ae-3bd0c1ca0fd6
3e0828eb-087b-4924-a3d8-ae23c1131c71
36455
fd6fc9ba-265c-4135-87c9-bbb7a8c4dc44
a05f98a0-1748-4c86-8b00-7a9f648cc96b
35645
4c0fb68f-c6c9-4b5e-a2aa-ec9f2a453005
4c0fb68f-c6c9-4b5e-a2aa-ec9f2a453005.2019-07-26T222623.449355Z
21347
ff085b77-ec9e-45a7-9ffb-cc4de40cb1b4
b123a61b-7aa4-41b8-8f71-bbb89dc33678
20666
c7b2a2c7-9917-4c76-ae0a-9aa30802b383
1e3daa7d-7ade-4c0f-b604-d79211ff5f38
19731
74804ad7-3439-4780-8d3c-cc471e6cd843
3973dee6-ae7c-40e2-9efe-8ce5eb31ce1a
19357
bundle_version
6 categories
Category Best annotation Cells
2019-07-26T223223.601337Z
3e0828eb-087b-4924-a3d8-ae23c1131c71
36455
2019-07-27T005118.176845Z
a05f98a0-1748-4c86-8b00-7a9f648cc96b
35645
2019-07-26T222623.449355Z
4c0fb68f-c6c9-4b5e-a2aa-ec9f2a453005.2019-07-26T222623.449355Z
21347
2019-07-27T003328.138697Z
b123a61b-7aa4-41b8-8f71-bbb89dc33678
20666
2019-07-27T003809.805677Z
1e3daa7d-7ade-4c0f-b604-d79211ff5f38
19731
2019-07-30T222005.820587Z
3973dee6-ae7c-40e2-9efe-8ce5eb31ce1a
19357
cell_suspension.genus_species.ontology
1 categories
Category Best annotation Cells
NCBITaxon:9606
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
cell_suspension.genus_species.ontology_label
1 categories
Category Best annotation Cells
Homo sapiens
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
cell_suspension.provenance.document_id
3 categories
Category Best annotation Cells
002ae0a7-5ec4-4aa9-8db5-84861be8e428
002ae0a7-5ec4-4aa9-8db5-84861be8e428
72100
d43360b9-2633-494a-aeb3-22fc84fbb894
d43360b9-2633-494a-aeb3-22fc84fbb894
42013
a286da91-6e9f-42dd-ae7b-9ee37fba9529
a286da91-6e9f-42dd-ae7b-9ee37fba9529
39088
derived_organ_label
1 categories
Category Best annotation Cells
brain (organoid)
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
derived_organ_ontology
1 categories
Category Best annotation Cells
UBERON:0000955 (organoid)
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
derived_organ_parts_label
1 categories
Category Best annotation Cells
nan
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
derived_organ_parts_ontology
1 categories
Category Best annotation Cells
nan
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
donor_organism.development_stage.ontology
1 categories
Category Best annotation Cells
HsapDv:0000087
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
donor_organism.development_stage.ontology_label
1 categories
Category Best annotation Cells
human adult stage
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
donor_organism.diseases.ontology
1 categories
Category Best annotation Cells
PATO:0000461
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
donor_organism.diseases.ontology_label
1 categories
Category Best annotation Cells
normal
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
donor_organism.human_specific.ethnicity.ontology
1 categories
Category Best annotation Cells
nan
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
donor_organism.human_specific.ethnicity.ontology_label
1 categories
Category Best annotation Cells
nan
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
donor_organism.is_living
1 categories
Category Best annotation Cells
yes
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
donor_organism.provenance.document_id
1 categories
Category Best annotation Cells
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
donor_organism.sex
1 categories
Category Best annotation Cells
nan
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
dss_bundle_fqid
6 categories
Category Best annotation Cells
d9313f14-d3ca-43d1-89ae-3bd0c1ca0fd6.2019-07-26T223223.601337Z
3e0828eb-087b-4924-a3d8-ae23c1131c71
36455
fd6fc9ba-265c-4135-87c9-bbb7a8c4dc44.2019-07-27T005118.176845Z
a05f98a0-1748-4c86-8b00-7a9f648cc96b
35645
4c0fb68f-c6c9-4b5e-a2aa-ec9f2a453005.2019-07-26T222623.449355Z
4c0fb68f-c6c9-4b5e-a2aa-ec9f2a453005.2019-07-26T222623.449355Z
21347
ff085b77-ec9e-45a7-9ffb-cc4de40cb1b4.2019-07-27T003328.138697Z
b123a61b-7aa4-41b8-8f71-bbb89dc33678
20666
c7b2a2c7-9917-4c76-ae0a-9aa30802b383.2019-07-27T003809.805677Z
1e3daa7d-7ade-4c0f-b604-d79211ff5f38
19731
74804ad7-3439-4780-8d3c-cc471e6cd843.2019-07-30T222005.820587Z
3973dee6-ae7c-40e2-9efe-8ce5eb31ce1a
19357
emptydrops_is_cell
2 categories
Category Best annotation Cells
f
f
82055
t
t
71146
file_uuid
6 categories
Category Best annotation Cells
3e0828eb-087b-4924-a3d8-ae23c1131c71
3e0828eb-087b-4924-a3d8-ae23c1131c71
36455
a05f98a0-1748-4c86-8b00-7a9f648cc96b
a05f98a0-1748-4c86-8b00-7a9f648cc96b
35645
f67fcb62-9526-470c-84f2-6c8a3bc3cecd
4c0fb68f-c6c9-4b5e-a2aa-ec9f2a453005.2019-07-26T222623.449355Z
21347
b123a61b-7aa4-41b8-8f71-bbb89dc33678
b123a61b-7aa4-41b8-8f71-bbb89dc33678
20666
1e3daa7d-7ade-4c0f-b604-d79211ff5f38
1e3daa7d-7ade-4c0f-b604-d79211ff5f38
19731
3973dee6-ae7c-40e2-9efe-8ce5eb31ce1a
3973dee6-ae7c-40e2-9efe-8ce5eb31ce1a
19357
file_version
6 categories
Category Best annotation Cells
2019-07-26T230331.706033Z
3e0828eb-087b-4924-a3d8-ae23c1131c71
36455
2019-07-27T012156.913944Z
a05f98a0-1748-4c86-8b00-7a9f648cc96b
35645
2019-07-26T225725.555369Z
4c0fb68f-c6c9-4b5e-a2aa-ec9f2a453005.2019-07-26T222623.449355Z
21347
2019-07-27T010418.187163Z
b123a61b-7aa4-41b8-8f71-bbb89dc33678
20666
2019-07-27T010751.916408Z
1e3daa7d-7ade-4c0f-b604-d79211ff5f38
19731
2019-07-30T224902.251842Z
3973dee6-ae7c-40e2-9efe-8ce5eb31ce1a
19357
library_preparation_protocol.end_bias
1 categories
Category Best annotation Cells
3 prime tag
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
library_preparation_protocol.input_nucleic_acid_molecule.ontology
1 categories
Category Best annotation Cells
OBI:0000869
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
library_preparation_protocol.input_nucleic_acid_molecule.ontology_label
1 categories
Category Best annotation Cells
polyA RNA extract
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
library_preparation_protocol.library_construction_method.ontology
1 categories
Category Best annotation Cells
EFO:0009310
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
library_preparation_protocol.library_construction_method.ontology_label
1 categories
Category Best annotation Cells
10X v2 sequencing
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
library_preparation_protocol.provenance.document_id
1 categories
Category Best annotation Cells
910266c3-64b1-4a3d-a4fe-844be494ffd1
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
library_preparation_protocol.strand
1 categories
Category Best annotation Cells
first
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
project.project_core.project_short_name
1 categories
Category Best annotation Cells
HPSI human cerebral organoids
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
project.project_core.project_title
1 categories
Category Best annotation Cells
Assessing the relevance of organoids to model inter-individual variation
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
project.provenance.document_id
1 categories
Category Best annotation Cells
005d611a-14d5-4fbf-846e-571a1f874f70
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
specimen_from_organism.organ.ontology
1 categories
Category Best annotation Cells
UBERON:0002097
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
specimen_from_organism.organ.ontology_label
1 categories
Category Best annotation Cells
skin of body
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
specimen_from_organism.organ_parts.ontology
1 categories
Category Best annotation Cells
UBERON:0001003
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
specimen_from_organism.organ_parts.ontology_label
1 categories
Category Best annotation Cells
skin epidermis
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
specimen_from_organism.provenance.document_id
1 categories
Category Best annotation Cells
b952a25e-6a70-4956-abf3-c195bae4c1b6
1399aa16-3fb0-4a04-a8d2-3af7e079ebf3
153201
CellID
barcode

Continuous Metadata

8
_Depth
_Detected_Genes
_Mitochondrial_Content
_Protein_Coding_Content
_Ribosomal_Content
_StableID
genes_detected
total_umis
Gene_filtering > _dr_2_umap_2D 153,201 cells x 58,347 genes
0 filters
General
Main plot

UMAP Plot

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Gene Expression

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Values from /layers/scaling_1_asap_seurat
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