scFAIR Schema Compliance

Validate your Loom files against the scFAIR schema to ensure compatibility.

Schema Documentation

Schema Version 7.1.0
Loom path translations (HTML)
View scFAIR Schema on GitHub

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Required Cell Metadata

assay_ontology_term_id, cell_type_ontology_term_id, disease_ontology_term_id, donor_id, and more.

Required Gene Metadata

ENSEMBL gene IDs (without version), feature_is_filtered flag.

Required Global Attributes

title, organism_ontology_term_id, and auto-generated schema fields.