Cell metadata used by ASAP to annotate single-cell datasets. This schema is mirroring the scFAIR metadata schema which is largely inspired from the CELLxGENE metadata schema.
| Name | Label | Metadata | Ontologies |
|---|---|---|---|
| organism | Organism |
attrs/organism_ontology_term_id
attrs/organism |
— |
| title | Title |
attrs/title
— |
— |
| technology | Technology |
assay_ontology_term_id
assay |
EFO |
| cell_type | Cell type |
cell_type_ontology_term_id
cell_type |
FBbt WBbt ZFA CL |
| developmental_stage | Developmental stage |
development_stage_ontology_term_id
development_stage |
HsapDv FBdv WBls MmusDv ZFS UBERON |
| disease | Disease |
disease_ontology_term_id
disease |
MONDO PATO |
| ethnicity | Ethnicity |
self_reported_ethnicity_ontology_term_id
self_reported_ethnicity |
HANCESTRO |
| sex | Sex |
sex_ontology_term_id
sex |
PATO |
| tissue | Tissue/Organ |
tissue_ontology_term_id
tissue |
FBbt WBbt ZFA UBERON CVCL |
| tissue_type | Tissue Type |
tissue_type
— |
— |
| suspension_type | Suspension Type |
suspension_type
— |
— |
| donor_id | Donor ID |
donor_id
— |
— |
| is_primary_data | Is Primary Data |
is_primary_data
— |
— |
| cell_line | Cell line |
—
— |
CVCL |