Loom
LOOM format
ASAP accepts as input HDF5 files following the LOOM format, developped by Linnarson lab. Note that ASAP complies with 3.0.0 specifications.
10x
10x H5 format
TXT
Plain-text format (compressed or not)
ASAP accepts as input simple Plain-text matrices, with as column delimiter tabulation, comma, semi-colon or space.
First or last column as gene names is optional. Gene names are then mapped to the Ensembl database.
First line as cell/sample names is optional too.
The file can be compressed.

TAR
Archive (compressed or not)
ASAP supports archive files that contain several datasets in a plain-text format. You can select which dataset to take as input in the interface.