LOOM format

ASAP accepts as input HDF5 files following the LOOM format, developped by Linnarson lab. Note that ASAP complies with 3.0.0 specifications.

10x H5 format

ASAP accepts as input HDF5 files (.h5) from CellRanger developped by 10x Genomics [specifications].

Plain-text format (compressed or not)

ASAP accepts as input simple Plain-text matrices, with as column delimiter tabulation, comma, semi-colon or space. First or last column as gene names is optional. Gene names are then mapped to the Ensembl database. First line as cell/sample names is optional too. The file can be compressed.

Archive (compressed or not)

ASAP supports archive files that contain several datasets in a plain-text format. You can select which dataset to take as input in the interface.