[HCA] Pancreas Islet of Langerhans ASAP2 v4

2,544 cells H. sapiens

Gene filtering #1 HVG [scanpy]

Success
2020-01-10 15:38 Wait 0:05 Run 0:31 Idle 0 Max. RAM 1.05TB

Filtering summary

Genes: 11615
Cells: 2341
Parameters
input_matrix:matrixn_bins:20n_top_genes:Noneis_logged:falsemin_disp:0.5max_disp:Infmin_mean:0.0125max_mean:3

Partial 'plotly_plot2' not found

Partial 'plotly_plot2' not found

Results (stored in gene_filtering/11071/output.loom )
cell Metadata
/col_attrs/donor_organism.sex 1 cell 2 categories /col_attrs/specimen_from_organism.organ_parts.ontology_label 1 cell 1 category /col_attrs/library_preparation_protocol.end_bias 1 cell 1 category /col_attrs/dss_bundle_fqid 2341 cells 1 row /col_attrs/_StableID 2341 cells 1 row /col_attrs/_Protein_Coding_Content 2341 cells 1 row /col_attrs/_Ribosomal_Content 2341 cells 1 row /col_attrs/donor_organism.diseases.ontology_label 1 cell 1 category /col_attrs/barcode 1 cell 1 category /col_attrs/total_umis 1 cell 1 category /col_attrs/cell_suspension.provenance.document_id 2341 cells 1 row /col_attrs/emptydrops_is_cell 1 cell 1 category /col_attrs/specimen_from_organism.organ.ontology_label 1 cell 1 category /col_attrs/library_preparation_protocol.provenance.document_id 1 cell 1 category /col_attrs/derived_organ_parts_label 1 cell 1 category /col_attrs/cell_suspension.genus_species.ontology_label 1 cell 1 category /col_attrs/donor_organism.is_living 1 cell 1 category /col_attrs/specimen_from_organism.organ_parts.ontology 1 cell 1 category /col_attrs/library_preparation_protocol.strand 1 cell 1 category /col_attrs/file_version 2341 cells 1 row /col_attrs/_Depth 2341 cells 1 row /col_attrs/_Detected_Genes 2341 cells 1 row /col_attrs/library_preparation_protocol.library_construction_method.ontology_label 1 cell 1 category /col_attrs/donor_organism.diseases.ontology 1 cell 1 category /col_attrs/bundle_uuid 2341 cells 1 row /col_attrs/_Mitochondrial_Content 2341 cells 1 row /col_attrs/derived_organ_parts_ontology 1 cell 1 category /col_attrs/project.project_core.project_title 1 cell 1 category /col_attrs/library_preparation_protocol.library_construction_method.ontology 1 cell 1 category /col_attrs/donor_organism.development_stage.ontology_label 1 cell 8 categories /col_attrs/library_preparation_protocol.input_nucleic_acid_molecule.ontology_label 1 cell 1 category /col_attrs/project.project_core.project_short_name 1 cell 1 category /col_attrs/donor_organism.human_specific.ethnicity.ontology_label 1 cell 4 categories /col_attrs/library_preparation_protocol.input_nucleic_acid_molecule.ontology 1 cell 1 category /col_attrs/donor_organism.provenance.document_id 1 cell 8 categories /col_attrs/analysis_working_group_approval_status 1 cell 1 category /col_attrs/derived_organ_ontology 1 cell 1 category /col_attrs/specimen_from_organism.provenance.document_id 1 cell 8 categories /col_attrs/donor_organism.development_stage.ontology 1 cell 8 categories /col_attrs/specimen_from_organism.organ.ontology 1 cell 1 category /col_attrs/bundle_version 2341 cells 1 row /col_attrs/analysis_protocol.protocol_core.protocol_id 1 cell 2 categories /col_attrs/analysis_protocol.provenance.document_id 2341 cells 1 row /col_attrs/file_uuid 2341 cells 1 row /col_attrs/genes_detected 2341 cells 1 row /col_attrs/derived_organ_label 1 cell 1 category /col_attrs/cell_suspension.genus_species.ontology 1 cell 1 category /col_attrs/project.provenance.document_id 1 cell 1 category /col_attrs/donor_organism.human_specific.ethnicity.ontology 1 cell 4 categories /col_attrs/CellID 2341 cells 1 row