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Release 5: 2020-02-12
Optimized asap_run docker, migration of v.2.7 python scripts to v.3.0.
Updated Ensembl data in asap_data database.
Tool/DB
Version
Details
Tool type
ASAP_data PostgreSQL database
v5
Database
Gene Ontology
2020-Jan
Database
Ensembl vertebrates
101
MySQL tables are used to populate gene sets for Reactome, Drugbank and GO.
Database
Ensembl genomes
58
MySQL tables are used to populate gene sets for Reactome, Drugbank and GO.
Database
fabdavid/asap_run
v5
Python
python3
3.7.6
h5py
3.1.0
leidenalg
0.8.7
loompy
3.0.6
louvain
0.7.0
matplotlib
3.3.2
numba
0.53.1
numpy
1.20.3
pandas
1.2.4
scikit-learn
0.24.2
scipy
1.6.3
umap-learn
0.5.1
R
R
3.6.2
hdf5r
1.3.4
scran
1.14.6
XVector
0.26.0
SC3
1.14.0
scater
1.14.6
cluster
2.1.0
limma
3.42.2
DESeq2
1.26.0
sva
3.34.0
genefilter
1.68.0
M3Drop
3.10.4
rhdf5
2.31.11
Seurat
3.1.5
future.apply
1.5.0
plotly
4.9.2.1
statmod
1.4.34
devtools
2.3.0
data.table
1.12.8
jsonlite
1.6.1
Rtsne
0.15
R6
2.4.1
sanon
1.6
reticulate
1.15
edgeR
3.28.1
Java
java
11.0.6
Docker