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scTF-seq atlas ASAP96 v8

45,978 cells M. musculus

Parsing - Gene Metadata - biotype

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General Information

Annotation Type

Gene

Dimensions
55536 genes 1 cell
Data Type
DISCRETE
Loom File Path

parsing/output.loom

Path in Loom File

/row_attrs/biotype

Produced by Analysis

Parsing

Size

1.8MB

Categories

IG_V_pseudogene (158 genes) translated_unprocessed_pseudogene (1 gene) sRNA (2 genes) TR_J_pseudogene (10 genes) IG_LV_gene (4 genes) scaRNA (51 genes) 3prime_overlapping_ncRNA (3 genes) snRNA (1385 genes) IG_V_gene (218 genes) IG_D_pseudogene (3 genes) transcribed_unitary_pseudogene (17 genes) unitary_pseudogene (24 genes) TR_V_gene (144 genes) macro_lncRNA (2 genes) processed_pseudogene (9941 genes) lincRNA (5854 genes) miRNA (2207 genes) misc_RNA (562 genes) sense_overlapping (30 genes) ribozyme (22 genes) IG_C_pseudogene (1 gene) protein_coding (22028 genes) rRNA (354 genes) TR_V_pseudogene (34 genes) TR_D_gene (4 genes) IG_D_gene (19 genes) Mt_rRNA (2 genes) Mt_tRNA (22 genes) bidirectional_promoter_lncRNA (190 genes) snoRNA (1507 genes) transcribed_processed_pseudogene (296 genes) TEC (3219 genes) transcribed_unprocessed_pseudogene (253 genes) pseudogene (61 genes) IG_J_gene (14 genes) IG_C_gene (13 genes) IG_pseudogene (2 genes) sense_intronic (327 genes) TR_C_gene (8 genes) unprocessed_pseudogene (2642 genes) scRNA (1 gene) TR_J_gene (70 genes) antisense (2959 genes) processed_transcript (790 genes) polymorphic_pseudogene (82 genes)

Preview

55,536 values (45 unique)

Index Value
0 TEC
1 snRNA
2 protein_coding
3 processed_pseudogene
4 TEC
5 TEC
6 TEC
7 antisense
8 TEC
9 processed_pseudogene
10 TEC
11 sense_intronic
12 TEC
13 TEC
14 snRNA
15 lincRNA
16 protein_coding
17 processed_pseudogene
18 TEC
19 protein_coding
20 processed_transcript
21 processed_pseudogene
22 snRNA
23 processed_pseudogene
24 lincRNA
25 processed_pseudogene
26 processed_pseudogene
27 processed_pseudogene
28 snRNA
29 processed_pseudogene
30 processed_pseudogene
31 protein_coding
32 TEC
33 protein_coding
34 protein_coding
35 protein_coding
36 processed_pseudogene
37 TEC
38 protein_coding
39 processed_pseudogene
40 TEC
41 antisense
42 processed_pseudogene
43 protein_coding
44 processed_pseudogene
45 TEC
46 TEC
47 protein_coding
48 processed_pseudogene
49 miRNA
50 TEC
51 protein_coding
52 processed_pseudogene
53 protein_coding
54 antisense
55 protein_coding
56 processed_pseudogene
57 processed_pseudogene
58 processed_pseudogene
59 protein_coding
60 TEC
61 processed_pseudogene
62 processed_pseudogene
63 processed_pseudogene
64 processed_pseudogene
65 processed_pseudogene
66 processed_pseudogene
67 protein_coding
68 processed_pseudogene
69 TEC
70 processed_pseudogene
71 processed_pseudogene
72 snoRNA
73 processed_pseudogene
74 lincRNA
75 processed_pseudogene
76 lincRNA
77 processed_pseudogene
78 processed_pseudogene
79 processed_pseudogene
80 processed_pseudogene
81 protein_coding
82 TEC
83 processed_pseudogene
84 TEC
85 miRNA
86 TEC
87 processed_pseudogene
88 processed_pseudogene
89 miRNA
90 processed_pseudogene
91 processed_pseudogene
92 processed_pseudogene
93 TEC
94 processed_pseudogene
95 TEC
96 processed_pseudogene
97 processed_pseudogene
98 processed_pseudogene
99 snRNA
... and 55,436 more values

Distribution (Top 25 categories)