Release 8
Release 8
August 05, 2026
Activated
Beta
Description
Updated docker (support of Seurat v5 pipeline). Updated database. New input format: Seurat v5 objects as .rds files.
Compliance Schemas
sc
scFAIR v7.1.0
(scFAIR schema v7.1.0)
Schema reference
Website
Loom Path Translation
Required for publishing
scFAIR validates single-cell transcriptomics datasets against the scFAIR cell metadata schema
Badges:
Tool Versions
| Tool | Version |
|---|---|
| fbbt | 2026-04-03 |
| hcao | |
| java | 11.0.6 |
| go_db | 2024-11-03 |
| panglaodb | 2020 |
| java_stats | 1.0 |
| ensembl_genomes | 63 |
| ensembl_vertebrate | 116 |
Docker Images
Raw metadata
{
"tag": "v8",
"call": "docker run #host_option --name #container_name --network=#run_network -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm #user_data_mount #env_file_option #image_name -c",
"name": "fabdavid/asap_run",
"version": 8
}
DockerImage.tools_json
{
"r": "4.5.2",
"hdf5r": "1.3.12",
"scran": "1.38.1",
"xvector": "0.50.0",
"sc3": "1.38.0",
"scater": "1.38.1",
"cluster": "2.1.8.2",
"limma_voom": "3.66.0",
"deseq2": "1.50.2",
"combat": "3.58.0",
"genefilter": "1.92.0",
"m3drop": "3.10.6",
"rhdf5": "2.54.1",
"seurat": "5.5.0",
"future.apply": "1.20.2",
"plotly": "4.12.0",
"statmod": "1.5.2",
"devtools": "2.5.2",
"datatable": "1.18.4",
"jsonlite": "2.0.0",
"rtsne": "0.17",
"r6": "2.6.1",
"sanon": "1.6",
"reticulate": "1.46.0",
"edger": "4.8.2",
"python3": "3.12.7",
"h5py": "3.12.1",
"leidenalg": "0.10.2",
"loompy": "3.0.7",
"matplotlib": "3.10.0",
"numba": "0.60.0",
"numpy": "2.0.2",
"pandas": "3.0.2",
"scikit_learn": "1.6.0",
"scipy": "1.15.0",
"umap_learn": "0.5.12",
"java": "17.0.19",
"bit64": "4.8.2"
}
fabdavid/asap_run (v8)
Java
Python
R
Raw environment JSON
{"hosts":{"localhost":{"nb_cores":80}},"types":{"mdata":{"description":"Metadata"},"dataset":{"description":"Matrix of values of any dimension and containing any type of data"},"col_mdata":{"description":"Cell metadata"},"row_mdata":{"description":"Gene metadata"},"int_matrix":{"description":"Count matrix (the matrix must contain only integer values)"},"num_matrix":{"description":"Numeric matrix (the matrix can contain integer or floating point values)"},"string_mdata":{"description":"Text metadata"},"numeric_mdata":{"description":"Numerical metadata"},"discrete_mdata":{"description":"Categorical metadata"},"with_mdata_ercc":{"description":"Metadata for ERCC must exist."}},"time_call":"time -o '#output_dir/exec_run_details.log' -f 'U=%U,S=%S,E=%E,P=%P,X=%X,D=%D,M=%M,K=%K,t=%t,I=%I,O=%O,F=%F,R=%R,W=%W' ","compliance":{"1":[{"url":"https://sc-fair.org","name":"scFAIR","version":"7.1.0","source_url":"https://github.com/scFAIR/scFAIR/blob/main/schema/7.1.0/README.md","description":"scFAIR validates single-cell transcriptomics datasets against the scFAIR cell metadata schema","if_compliant":["allow_public"],"compliant_icon":"scfair_badge_compliant.svg","not_compliant_icon":"scfair_badge_noncompliant.svg","source_schema_name":"scFAIR schema"}]},"dashboards":{"std_runs":{"icon_class":"fa fa-bars"},"dim_reduction":{"icon_class":"scatter_plot-icon"}},"exec_stderr":"#output_dir/exec.err","exec_stdout":"#output_dir/exec.out","asap_run_java":"ASAP-2.0.jar","docker_images":{"asap_run":{"tag":"v8","call":"docker run #host_option --name #container_name --network=#run_network -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm #user_data_mount #env_file_option #image_name -c","name":"fabdavid/asap_run","version":8}},"tool_versions":{"fbbt":"2026-04-03","hcao":null,"java":"11.0.6","go_db":"2024-11-03","panglaodb":"2020","java_stats":"1.0","ensembl_genomes":"63","ensembl_vertebrate":"116"},"asap_data_db_name":"asap_data_v8","asap_data_db_version":8}