External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, and GEO. Create an ASAP project from an entry that is not imported yet.

2 – 11'441'407
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Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Large intestine - A single-cell transcriptomic atlas characterizes ageing tis... Publication DOI
de4e7a0c-91b2-44e4-b382-87da74c9efb6
Mus musculus
1'887 cells x 17'943 genes h5ad
42.1 MB
 Not in ASAP Details
hca
sc
A human embryonic limb cell atlas resolved in space and time Publication DOI
b176d756-62d8-4933-83a4-8b026380262f::3e69c025-f1ae-4165-a485-c8fba0451c19
Homo sapiens
1'889 cells h5ad
45.3 MB
 Not in ASAP Details
hca
sc
Single-cell analyses of renal cell cancers reveal insights into tumor microen... Publication DOI
7c599029-7a3c-4b5c-8e79-e72c9a9a65fe::f2f82106-5f4f-4606-bba8-84c274eab94f
Homo sapiens
1'896 cells h5
6.8 MB
 Not in ASAP Details
geo
bulk
Characterization of Hypothetical Proteins Reveals Function Modules and Virule...
GSE256222
Pseudomonas aeruginosa PAO1
1'898 samples archive_table
2.43 GB
 Not in ASAP Details
geo
bulk
Commensal-derived acetylcholine enhances mucosal immune education
GSE326449
Homo sapiens; Citrobacter portucalensis; Mus musculus
1'901 samples archive_table
37.8 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA sequencing of mouse hematopoietic stem and progenitor cells Publication DOI
E-GEOD-81682
Mus musculus
1'919 cells h5ad
249 MB
 Not in ASAP Details
hca
sc
Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI
9d97f01f-9313-416e-9b07-560f048b2350::29372676-7b50-4545-ae0b-66660eec46bb
Homo sapiens
1'921 cells h5
7.76 MB
 Not in ASAP Details
hca
sc
Single-cell analyses of renal cell cancers reveal insights into tumor microen... Publication DOI
7c599029-7a3c-4b5c-8e79-e72c9a9a65fe::5cbfe88a-0ef7-49e4-be25-a8b4ee79840c
Homo sapiens
1'953 cells h5
9.48 MB
 Not in ASAP Details
cellxgene
sc
dataset of 'High-resolution single-cell transcriptomic survey of cardiomyocyt... Publication DOI
f3ee7613-b27f-4deb-a5aa-1d4f9a2db963
Homo sapiens
1'971 cells x 32'118 genes h5ad
70.3 MB
 Not in ASAP Details
hca
sc
High-resolution single-cell transcriptomic survey of cardiomyocytes from pati... Publication DOI
b486e0d9-dd8e-462a-b662-9a5bbad5edae::b26c5724-f8ea-4ce2-aed9-d9d26a248e97
Homo sapiens
1'971 cells h5ad
71.2 MB
 Not in ASAP Details
ebi_sc
sc
Comparative analysis of kidney organoid and adult human kidney single cell an... Publication DOI
E-CURD-135
Homo sapiens
1'982 cells h5ad
45 MB
 Not in ASAP Details
hca
sc
Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI
9d97f01f-9313-416e-9b07-560f048b2350::4d811365-5fcc-4dee-b93d-4dfae072ce52
Homo sapiens
1'994 cells h5
7.87 MB
 Not in ASAP Details
broad_scp
sc
Transcriptomic landscape of the blastema niche in regenerating adult axolotl ... Publication DOI
SCP499
 2'013 cells x 59'171 genes counts_table
38.5 MB
 Not in ASAP Details
cellxgene
sc
Aging mouse ovary: Immune cells Publication DOI
c32b7e3d-0e4b-4d13-bc1d-b80200fff6c4
Mus musculus
2'029 cells x 20'053 genes h5ad
55 MB
 Not in ASAP Details
hca
sc
Spatial transcriptomic profiling of human retinoblastoma Publication DOI
1662accf-0e0c-48c4-9314-5aba063f2220::ba8ca8cb-31e8-46ea-aec4-ff5122057a1f
Homo sapiens
2'035 cells h5
4.84 MB
 Not in ASAP Details
cellxgene
sc
74 years old female - Airway Wash (8 days post-intubation) Publication DOI
731e6380-879f-4b0b-9a1f-2150208852ef
Homo sapiens
2'065 cells x 32'393 genes h5ad
30.8 MB
 Not in ASAP Details
cellxgene
sc
Endothelial - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
3e87b1fa-472a-401c-8fa8-f31c10437d5f
Homo sapiens
2'069 cells x 35'483 genes h5ad
32 MB
 Not in ASAP Details
cellxgene
sc
Bronchial scRNA-Seq Dataset Publication DOI
d2bc2703-a9b5-4949-b85d-61da7b9961b1
Homo sapiens
2'075 cells x 23'572 genes h5ad
37.1 MB
 Not in ASAP Details
cellxgene
sc
Adult bladder immune subset Publication DOI
601c7454-17ff-432c-8e0d-902bfddb8013
Homo sapiens
2'094 cells x 35'459 genes h5ad
33 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA-seq of microglia cells isolated from the hippocampus of a mou... Publication DOI
E-GEOD-103334
Mus musculus
2'094 cells h5ad
123 MB
 Not in ASAP Details
cellxgene
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra -... Publication DOI
ea426edb-4e86-4c53-ab17-5b952d94a31e
Homo sapiens
2'113 cells x 22'489 genes h5ad
17.2 MB
 Not in ASAP Details
broad_scp
sc
FoxP3- CD4+ Tconv cells and FoxP3+ CD4+ Treg cells from secondary lymphoid or...
SCP180
 2'116 cells x 23'725 genes counts_table
2.36 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA-seq of cancer stem cells from patients with chronic myeloid l... Publication DOI
E-GEOD-76312
Homo sapiens
2'120 cells h5ad
270 MB
 Not in ASAP Details
cellxgene
sc
A Single-Cell Transcriptome Atlas of the Human Pancreas Publication DOI
b07e5164-baf6-43d2-bdba-5a249d0da879
Homo sapiens
2'126 cells x 15'643 genes h5ad
50.6 MB
 Not in ASAP Details
broad_scp
sc
Single-cell RNA-seq reveals changes in cell cycle and differentiation program... Publication DOI
SCP14
 2'128 cells x 23'366 genes counts_table
247 MB
 Not in ASAP Details
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