External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
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Source Dataset Matrix Format ASAP Actions
cellxgene
sc
E9.0: Puck_220615_36 Publication DOI
b09f9b6a-7c4b-4345-9298-153bdc41191a
Mus musculus
3'076 cells x 27'368 genes h5ad
13.5 MB
 Not in ASAP Details
broad_scp
sc
Prostate organoid -vehicle_uk5099
SCP1234
Mus musculus
3'087 cells x 19'002 genes counts_table
249 MB
 Not in ASAP Details
hca
sc
Spatial multiomics map of trophoblast development in early pregnancy Publication DOI
aecfd908-674c-4d4e-b36e-0c1ceab02245::56ab907e-251f-4333-82e4-f8487dcd03b4
Homo sapiens
3'130 cells h5
11.1 MB
 Not in ASAP Details
hca
sc
Spatial multiomics map of trophoblast development in early pregnancy Publication DOI
aecfd908-674c-4d4e-b36e-0c1ceab02245::14789bfd-8aa9-4b4e-bb24-00c30009d8a2
Homo sapiens
3'130 cells h5ad
48.9 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::14358955-97ed-48f0-b8b8-d68faec69c2d
Homo sapiens
3'134 cells h5
10.2 MB
 Not in ASAP Details
cellxgene
sc
Trachea - A single-cell transcriptomic atlas characterizes ageing tissues in ... Publication DOI
3f4fe86f-aced-4d10-b174-ee35b9f46b9d
Mus musculus
3'160 cells x 21'025 genes h5ad
74 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA-seq of mouse brain vascular transcriptomes Publication DOI
E-GEOD-98816
Mus musculus
3'186 cells h5ad
226 MB
 Not in ASAP Details
cellxgene
sc
A single-cell multi-omic atlas spanning the adult rhesus macaque brain (cell ... Publication DOI
885d325f-b478-408b-b184-510b4db4f85f
Macaca mulatta
3'190 cells x 29'060 genes h5ad
16.5 MB
 Not in ASAP Details
cellxgene
sc
E9.0: Puck_220718_28 Publication DOI
368a620e-e7a5-4b09-955b-2f0e72eae611
Mus musculus
3'196 cells x 27'368 genes h5ad
15.4 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA sequencing of myeloid cells from the aortas of ApoE-/- and Ap... Publication DOI
E-MTAB-10746
Mus musculus
3'197 cells h5ad
54 MB
 Not in ASAP Details
cellxgene
sc
A single-cell and spatially-resolved atlas of human breast cancers - B_cells Publication DOI
04d87de6-c20a-4186-8884-f47dba20b0a4
Homo sapiens
3'206 cells x 28'468 genes h5ad
17.4 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep2: Puck_220815_04 Publication DOI
ccefb404-21e6-4188-b860-69f449431fc1
Mus musculus
3'214 cells x 27'368 genes h5ad
19 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240108_17' Publication DOI
1479cc99-c436-49ed-9853-4a0c6a613828
Mus musculus
3'230 cells x 29'286 genes h5ad
16 MB
 Not in ASAP Details
cellxgene
sc
Mammary gland - A single-cell transcriptomic atlas characterizes ageing tissu... Publication DOI
bc7466d7-ff13-4ff2-9c3d-7a1d208bd492
Mus musculus
3'282 cells x 21'025 genes h5ad
102 MB
 Not in ASAP Details
cellxgene
sc
UMAP of Myeloid cells Publication DOI
94423ec1-21f8-40e8-b5c9-c3ea82350ca4
Homo sapiens
3'282 cells x 32'383 genes h5ad
18.6 MB
 Not in ASAP Details
cellxgene
sc
E9.0: Puck_220615_34 Publication DOI
e5ac5022-58de-44bb-ae88-a34c94e1b45b
Mus musculus
3'316 cells x 27'368 genes h5ad
14.3 MB
 Not in ASAP Details
cellxgene
sc
OPCs Publication DOI
82346769-8733-485e-ab49-f14923d2b5bc
Homo sapiens
3'324 cells x 60'305 genes h5ad
63.2 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep2: Puck_220815_08 Publication DOI
482216eb-9b13-4b47-a7bc-52c99e5d8c13
Mus musculus
3'332 cells x 27'368 genes h5ad
19.6 MB
 Not in ASAP Details
cellxgene
sc
Major cell cluster: Testis and adrenal Publication DOI
0bcda669-c2ab-484f-a87f-4e21f7a5bcab
Mus musculus
3'342 cells x 45'525 genes h5ad
58.7 MB
 Not in ASAP Details
cellxgene
sc
progressive_plasticity_during_crc_metastasis_kg146_tumor Publication DOI
2e95d453-930b-4425-9475-ccaf8cf2ac40
Homo sapiens
3'351 cells x 25'344 genes h5ad
70.1 MB
 Not in ASAP Details
hca
sc
Spatial multiomics map of trophoblast development in early pregnancy Publication DOI
aecfd908-674c-4d4e-b36e-0c1ceab02245::4dcb98e7-61bf-4ef0-a0e4-12f6d2561090
Homo sapiens
3'355 cells h5
11.4 MB
 Not in ASAP Details
hca
sc
Spatial multiomics map of trophoblast development in early pregnancy Publication DOI
aecfd908-674c-4d4e-b36e-0c1ceab02245::2ca35ce6-4bd5-467d-80d8-334f257c4885
Homo sapiens
3'355 cells h5ad
50.7 MB
 Not in ASAP Details
matkp
sc
Single cell RNA-seq of mouse brown adipose tissue (whole cell), 2022 (subcuta... Publication DOI
SingleCell_Li2022_Mouse_SCP708_WC_BAT
Mus musculus
3'364 cells zip
10 MB
 Not in ASAP Details
cellxgene
sc
Puck 'A0029_026' Publication DOI
f8b8ea2d-4048-4aa1-a86c-743720a7e4f7
Mus musculus
3'367 cells x 29'286 genes h5ad
9.61 MB
 Not in ASAP Details
cellxgene
sc
E9.0: Puck_220718_36 Publication DOI
fe70db78-88b8-4bf7-8449-7aa177d51978
Mus musculus
3'374 cells x 27'368 genes h5ad
13.4 MB
 Not in ASAP Details
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