External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
WSSS_F_IMMsp10864182 Publication DOI
f1e4a73c-33ab-4564-bf92-742f8b286da6
Homo sapiens
4'992 cells x 35'477 genes h5ad
145 MB
 Not in ASAP Details
cellxgene
sc
WSSS_F_IMMsp9838715 Publication DOI
c4e2bde2-3c51-4d10-9fd6-053e212b4824
Homo sapiens
4'992 cells x 35'477 genes h5ad
146 MB
 Not in ASAP Details
cellxgene
sc
6800STDY12499506 Publication DOI
75548d10-160d-4f3e-b317-99ad9630c62d
Homo sapiens
4'992 cells x 35'477 genes h5ad
147 MB
 Not in ASAP Details
cellxgene
sc
Visium spatial - bcc_face_forehead_A Publication DOI
ef9a2058-513b-44f7-9057-06c0df86f2a3
Homo sapiens
4'992 cells x 35'477 genes h5ad
149 MB
 Not in ASAP Details
cellxgene
sc
control_P17 (ACH002)-Spatial multi-omic map of human myocardial infarction Publication DOI
58af04fb-de1f-4ba3-8d19-d26610526f14
Homo sapiens
4'992 cells x 35'477 genes h5ad
150 MB
 Not in ASAP Details
cellxgene
sc
WSSS_F_IMMsp10864183 Publication DOI
001b01fe-5c70-4bda-a3aa-ee09b7899b14
Homo sapiens
4'992 cells x 35'477 genes h5ad
152 MB
 Not in ASAP Details
cellxgene
sc
6800STDY12499507 Publication DOI
c5ac3ec2-24b0-43cc-9aab-bb0ebbe205ce
Homo sapiens
4'992 cells x 35'477 genes h5ad
152 MB
 Not in ASAP Details
cellxgene
sc
control_P8 (ACH004)-Spatial multi-omic map of human myocardial infarction Publication DOI
2257d8b0-7385-48b8-8dca-c5772592c5ea
Homo sapiens
4'992 cells x 35'477 genes h5ad
154 MB
 Not in ASAP Details
cellxgene
sc
thymus visium sample TA11486161 Publication DOI
7158766e-e1a3-4895-a81a-8b043fdd3bb6
Homo sapiens
4'992 cells x 35'477 genes h5ad
155 MB
 Not in ASAP Details
cellxgene
sc
WSSS_F_IMMsp9838716 Publication DOI
aede7ec2-a32a-418f-b8f9-3a5c9b26245a
Homo sapiens
4'992 cells x 35'477 genes h5ad
156 MB
 Not in ASAP Details
cellxgene
sc
thymus visium sample TA11486162 Publication DOI
1b2d0349-d2b2-4138-b86f-863b4410402c
Homo sapiens
4'992 cells x 35'477 genes h5ad
158 MB
 Not in ASAP Details
cellxgene
sc
thymus visium sample WSSS_THYst9142087 Publication DOI
48900359-9ba9-4337-b1c6-a2393b17d670
Homo sapiens
4'992 cells x 35'477 genes h5ad
158 MB
 Not in ASAP Details
cellxgene
sc
Visium spatial - face_temple_B_b Publication DOI
dce10ba0-1548-4f2f-9959-77d1090bf196
Homo sapiens
4'992 cells x 35'477 genes h5ad
159 MB
 Not in ASAP Details
cellxgene
sc
thymus visium sample WSSS_THYst9518032 Publication DOI
1a381d53-3af7-48a3-9a45-93e40cbeb924
Homo sapiens
4'992 cells x 35'477 genes h5ad
159 MB
 Not in ASAP Details
cellxgene
sc
IZ_P3 (10X0017)-Spatial multi-omic map of human myocardial infarction Publication DOI
4c367cfb-fd4c-4505-bac9-5456f4fb3a44
Homo sapiens
4'992 cells x 35'477 genes h5ad
160 MB
 Not in ASAP Details
cellxgene
sc
thymus visium sample TA11486164 Publication DOI
3a29c3df-b45a-403d-bd76-259640245432
Homo sapiens
4'992 cells x 35'477 genes h5ad
160 MB
 Not in ASAP Details
cellxgene
sc
thymus visium sample WSSS_THYst9142086 Publication DOI
d551b400-b2e5-454d-b5a9-ece03e6b4739
Homo sapiens
4'992 cells x 35'477 genes h5ad
160 MB
 Not in ASAP Details
cellxgene
sc
control_P1 (10X001)-Spatial multi-omic map of human myocardial infarction Publication DOI
77e04629-a8fa-4d34-bf5f-622d9aed9f35
Homo sapiens
4'992 cells x 35'477 genes h5ad
160 MB
 Not in ASAP Details
cellxgene
sc
6800STDY12499509 Publication DOI
81328f3f-31d4-47e3-9eae-e07512026ce1
Homo sapiens
4'992 cells x 35'477 genes h5ad
161 MB
 Not in ASAP Details
cellxgene
sc
RZ_P3 (10X0020)-Spatial multi-omic map of human myocardial infarction Publication DOI
51a4096f-9fe3-49df-b201-6877a1f67868
Homo sapiens
4'992 cells x 35'477 genes h5ad
161 MB
 Not in ASAP Details
cellxgene
sc
6800STDY12499413 Publication DOI
a45125aa-7641-4bca-bca5-6d652e027d6f
Homo sapiens
4'992 cells x 35'477 genes h5ad
161 MB
 Not in ASAP Details
cellxgene
sc
RZ_P6 (ACH0021)-Spatial multi-omic map of human myocardial infarction Publication DOI
95e1779d-25d6-4274-bf2b-7db1f4380c0c
Homo sapiens
4'992 cells x 35'477 genes h5ad
161 MB
 Not in ASAP Details
cellxgene
sc
thymus visium sample WSSS_THYst9518033 Publication DOI
b80d2efd-3602-4419-b8e7-8fdeaf431f05
Homo sapiens
4'992 cells x 35'477 genes h5ad
161 MB
 Not in ASAP Details
cellxgene
sc
IZ_BZ_P2 (10X0018)-Spatial multi-omic map of human myocardial infarction Publication DOI
91d3b939-744f-45d3-b782-79196ed93612
Homo sapiens
4'992 cells x 35'477 genes h5ad
162 MB
 Not in ASAP Details
cellxgene
sc
thymus visium sample TA11486163 Publication DOI
d50a5a5c-17e7-486b-81a8-5af7d53de414
Homo sapiens
4'992 cells x 35'477 genes h5ad
162 MB
 Not in ASAP Details
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