Candidate datasets from CELLxGENE, Bgee, HCA, and GEO. Create an ASAP project from an entry that is not imported yet.
| Source | Dataset | Organism | Matrix | Format | Publication | ASAP | Actions |
|---|---|---|---|---|---|---|---|
|
cellxgene
sc
|
Spatial transcriptomics in mouse: Puck_200104_02
a5939d1c-3f1d-4931-abf2-735d82fda26c
|
Mus musculus
tax 10090
|
27'044 cells x 20'452 genes |
h5ad
19.6 MB
|
10.1016/j.isci.2022.104097 | Not in ASAP | Details |
|
cellxgene
sc
|
A total of 27,092 droplet-based single-nucleus transcriptomes profiled across...
595c9010-99ec-462d-b6a1-2b2fe5407871
|
Homo sapiens
tax 9606
|
27'092 cells x 35'469 genes |
h5ad
311 MB
|
10.1038/s41586-021-03710-0 | Not in ASAP | Details |
|
cellxgene
sc
|
Visium spatial - SAN
25681e1c-a4f6-4948-aa5f-39d1f239f182
|
Homo sapiens
tax 9606
|
27'108 cells x 32'383 genes |
h5ad
278 MB
|
10.1038/s41586-023-06311-1 | Not in ASAP | Details |
|
cellxgene
sc
|
Mouse tracheal epithelial cells at air/liquid interface for one, three, nine,...
2ae39b65-06f8-4dd8-891f-efc68f39a1c6
|
Mus musculus
tax 10090
|
27'111 cells x 30'146 genes |
h5ad
1.65 GB
|
10.1038/s41586-024-07476-z | Not in ASAP | Details |
|
cellxgene
sc
|
Dissection: Thalamus (THM) - Lateral nuclear complex of thalamus (LNC) - vent...
a7b4f565-691d-43ea-bf4a-d2d1d52bb4b4
|
Homo sapiens
tax 9606
|
27'111 cells x 58'232 genes |
h5ad
260 MB
|
10.1126/science.add7046 | Not in ASAP | Details |
|
cellxgene
sc
|
Tabula Sapiens - Bone_Marrow
4f1555bc-4664-46c3-a606-78d34dd10d92
|
Homo sapiens
tax 9606
|
27'112 cells x 60'606 genes |
h5ad
983 MB
|
10.1126/science.abl4896 +1 | Not in ASAP | Details |
|
cellxgene
sc
|
Spatial transcriptomics in mouse: Puck_191223_11
6c0b6bbf-faf4-4612-8823-a0908d31dbc9
|
Mus musculus
tax 10090
|
27'173 cells x 20'265 genes |
h5ad
18.3 MB
|
10.1016/j.isci.2022.104097 | Not in ASAP | Details |
|
cellxgene
sc
|
fetal
a51c6ece-5731-4128-8c1e-5060e80c69e4
|
Homo sapiens
tax 9606
|
27'197 cells x 31'998 genes |
h5ad
336 MB
|
10.1038/s41467-021-23949-5 | Not in ASAP | Details |
|
cellxgene
sc
|
Fetal kidney dataset: full
d7dcfd8f-2ee7-4385-b9ac-e074c23ed190
|
Homo sapiens
tax 9606
|
27'197 cells x 32'088 genes |
h5ad
323 MB
|
10.1126/science.aat5031 | Not in ASAP | Details |
|
cellxgene
sc
|
Dissection: Myelencephalon (medulla oblongata) (Mo) - afferent nuclei of cran...
07b1d7c8-5c2e-42f7-9246-26f746cd6013
|
Homo sapiens
tax 9606
|
27'210 cells x 58'232 genes |
h5ad
190 MB
|
10.1126/science.add7046 | Not in ASAP | Details |
|
cellxgene
sc
|
Spatial transcriptomics in mouse: Puck_191204_24
707acde8-4e99-4e31-8da9-782ded87d136
|
Mus musculus
tax 10090
|
27'220 cells x 19'659 genes |
h5ad
11.3 MB
|
10.1016/j.isci.2022.104097 | Not in ASAP | Details |
|
cellxgene
sc
|
Sub UMAP of the CNS other
b3327332-ad36-4f5d-b9a0-7e3a55606928
|
Danio rerio
tax 7955
|
27'338 cells x 32'031 genes |
h5ad
25.5 MB
|
10.1101/2025.04.03.646654 +1 | Not in ASAP | Details |
|
cellxgene
sc
|
Spatial transcriptomics in mouse: Puck_200104_10
d4f003d4-1e87-4301-84e6-8e01a69aa426
|
Mus musculus
tax 10090
|
27'429 cells x 20'177 genes |
h5ad
14.4 MB
|
10.1016/j.isci.2022.104097 | Not in ASAP | Details |
|
cellxgene
sc
|
Spatial transcriptomics in mouse: Puck_200102_09
5767c838-0d36-44bb-b025-a4dfe5cdd908
|
Mus musculus
tax 10090
|
27'479 cells x 21'482 genes |
h5ad
27.4 MB
|
10.1016/j.isci.2022.104097 | Not in ASAP | Details |
|
cellxgene
sc
|
Sub UMAP of the endothelium
6672ee00-8e76-4fa9-a54b-e238273d730b
|
Danio rerio
tax 7955
|
27'484 cells x 32'031 genes |
h5ad
34.8 MB
|
10.1101/2025.04.03.646654 +1 | Not in ASAP | Details |
|
cellxgene
sc
|
Sub UMAP of the midbrain
dd8d88d7-c56e-4d34-bb13-ace12ae4da87
|
Danio rerio
tax 7955
|
27'534 cells x 32'031 genes |
h5ad
24.6 MB
|
10.1101/2025.04.03.646654 +1 | Not in ASAP | Details |
|
cellxgene
sc
|
Human Stem Cells (LIV and TH) - A cell atlas of human thymic development defi...
814f2c97-49e4-4a17-be26-fde3c4c57d1b
|
Homo sapiens
tax 9606
|
27'589 cells x 32'088 genes |
h5ad
445 MB
|
10.1126/science.aay3224 +1 | Not in ASAP | Details |
|
cellxgene
sc
|
Spatial transcriptomics in mouse: Puck_191204_05
2214c7a9-371f-4520-a2d0-88524b80b577
|
Mus musculus
tax 10090
|
27'639 cells x 21'394 genes |
h5ad
21.3 MB
|
10.1016/j.isci.2022.104097 | Not in ASAP | Details |
|
cellxgene
sc
|
snRNA-seq of human adipose tissue - adipocytes from subcutaneous and visceral...
11622d58-4dfe-4a81-b3d2-c4cabbfd636a
|
Homo sapiens
tax 9606
|
27'665 cells x 35'477 genes |
h5ad
328 MB
|
10.1038/s41588-024-02048-3 +1 | Not in ASAP | Details |
|
cellxgene
sc
|
Living donor kidney
0bae7ebf-eb54-46a6-be9a-3461cecefa4c
|
Homo sapiens
tax 9606
|
27'675 cells x 26'791 genes |
h5ad
453 MB
|
10.1038/s41467-022-35297-z | Not in ASAP | Details |
|
hca
sc
|
Spatial transcriptomics of healthy and fibrotic human liver at single-cell re...
64809a52-f703-4aec-b3a5-eca808a971d0::b3e48131-280e-488b-8e95-4321bef2966e
|
Homo sapiens
tax 9606
|
27'692 cells |
h5ad
5.46 GB
|
10.1101/2024.02.02.578633 +1 | Not in ASAP | Details |
|
cellxgene
sc
|
Cutaneous melanoma, lymph node metastasis Puck_220215_13
89972213-8510-49c3-a55a-01cd248ef88a
|
Homo sapiens
tax 9606
|
27'757 cells x 29'586 genes |
h5ad
27.8 MB
|
10.1016/j.immuni.2022.09.002 | Not in ASAP | Details |
|
cellxgene
sc
|
Sub UMAP of the spinal cord
8d739cc9-4043-40cc-92d5-7b328f2f8ae1
|
Danio rerio
tax 7955
|
27'772 cells x 32'031 genes |
h5ad
25.2 MB
|
10.1101/2025.04.03.646654 +1 | Not in ASAP | Details |
|
cellxgene
sc
|
Spatial transcriptomics in mouse: Puck_191204_18
3483835a-fdd2-4589-8de3-530e2a13ad14
|
Mus musculus
tax 10090
|
27'814 cells x 18'729 genes |
h5ad
6.94 MB
|
10.1016/j.isci.2022.104097 | Not in ASAP | Details |
|
cellxgene
sc
|
10X Visium spatial transcriptomics on tumor-normal interface tissue sections
eaf0c852-1dff-47ab-8de2-a33a59969a40
|
Homo sapiens
tax 9606
|
27'912 cells x 35'469 genes |
h5ad
91.3 MB
|
10.1016/j.ccell.2022.11.001 +1 | Not in ASAP | Details |