External catalog

Candidate datasets from CELLxGENE, Bgee, HCA, and GEO. Create an ASAP project from an entry that is not imported yet.

Reset 13988 candidates
Source Dataset Matrix Format ASAP Actions
hca
sc
Cells of the human intestinal tract mapped across space and time Publication DOI
fde199d2-a841-4ed1-aa65-b9e0af8969b1::84a47d74-99a5-4080-aafc-0457cf7b8174
Homo sapiens
350'000 cells h5ad
5.72 GB
 Not in ASAP Details
cellxgene
sc
HBCA - epithelial Publication DOI
975e13b6-bec1-4eed-b46a-9be1f1357373
Homo sapiens
352'496 cells x 33'604 genes h5ad
4.2 GB
 Not in ASAP Details
cellxgene
sc
human intestine organoid cell atlas Publication DOI
776a1e4a-f141-49bb-9978-d0588a4cee9f
Homo sapiens
353'140 cells x 23'033 genes h5ad
5.38 GB
 Not in ASAP Details
cellxgene
sc
Integrated cancer cell-specific single-cell RNA-seq datasets of immune checkp... Publication DOI
7b20c613-9add-43d1-87e9-defd3d9b9f8c
Homo sapiens
355'941 cells x 22'779 genes h5ad
2.85 GB
 Not in ASAP Details
cellxgene
sc
All - A single-cell transcriptomic atlas characterizes ageing tissues in the ... Publication DOI
f16a8f4d-bc97-43c5-a2f6-bbda952e4c5c
Mus musculus
356'213 cells x 17'983 genes h5ad
5.61 GB
 Not in ASAP Details
cellxgene
sc
All Cells Publication DOI
16023185-de21-4c0d-a9c8-73abdd52d142
Homo sapiens
370'115 cells x 38'361 genes h5ad
3.5 GB
 Not in ASAP Details
cellxgene
sc
A single-cell multi-omic atlas spanning the adult rhesus macaque brain (cell ... Publication DOI
693f1ad9-0dbc-4efe-bdc3-47018d5880d6
Macaca mulatta
371'324 cells x 29'060 genes h5ad
568 MB
 Not in ASAP Details
cellxgene
sc
A single-cell multi-omic atlas spanning the adult rhesus macaque brain (cell ... Publication DOI
228286c6-7e17-41e0-b1fe-3b0b334e71cc
Macaca mulatta
371'548 cells x 29'060 genes h5ad
961 MB
 Not in ASAP Details
hca
sc
Human SARS-CoV-2 challenge resolves local and systemic response dynamics Publication DOI
16dc40f9-2c13-42e3-8cdf-251e95bfc043::9a878b57-7739-4668-adc3-11d54df3e3ef
Homo sapiens
371'892 cells h5ad
3.02 GB
 Not in ASAP Details
cellxgene
sc
snRNA-seq of all cells in high-risk Neuroblastoma before and after chemotherapy Publication DOI
afae4675-434d-4e89-b5ce-2854c9dc38a3
Homo sapiens
372'619 cells x 20'537 genes h5ad
4.38 GB
 Not in ASAP Details
cellxgene
sc
snRNA-seq of human retina - retinal ganglion cell subset Publication DOI
95ce06a0-7de9-4ab2-bcd1-a6625f55e7e3
Homo sapiens
372'816 cells x 35'475 genes h5ad
6.83 GB
 Not in ASAP Details
cellxgene
sc
Telencephalon Publication DOI
675873e1-3f1d-4bd5-9fad-3ce8a5ad98e1
Homo sapiens
377'022 cells x 58'226 genes h5ad
2.73 GB
 Not in ASAP Details
cellxgene
sc
BrainAgingSpatialAtlas_MERFISH Publication DOI
cb34cb2d-aee2-4272-86ed-f8e1af870e52
Mus musculus
378'918 cells x 374 genes h5ad
335 MB
 Not in ASAP Details
cellxgene
sc
BrainAgingSpatialAtlas_Imputed Publication DOI
e9a7ead8-c994-4178-b4e4-db951f1bd31a
Mus musculus
378'918 cells x 7'276 genes h5ad
15.9 GB
 Not in ASAP Details
cellxgene
sc
HypoMap – a unified single cell gene expression atlas of the murine hypothalamus Publication DOI
dbb4e1ed-d820-4e83-981f-88ef7eb55a35
Mus musculus
384'925 cells x 51'216 genes h5ad
3.55 GB
 Not in ASAP Details
cellxgene
sc
Lymphocytes from human PBMC samples collected in Indonesia Publication DOI
55ec1734-60b6-496e-87ad-6f2f44229422
Homo sapiens
389'095 cells x 36'030 genes h5ad
2.86 GB
 Not in ASAP Details
cellxgene
sc
Monocyte and dendritic cells Publication DOI
c0ee763d-fc9e-44e1-bd1f-bebcde1240d9
Homo sapiens
389'187 cells x 18'063 genes h5ad
5.36 GB
 Not in ASAP Details
cellxgene
sc
thymus scRNA-seq atlas - T cell subset Publication DOI
cfcec0ab-909c-4334-9683-b275e0b4dcc0
Homo sapiens
391'462 cells x 35'477 genes h5ad
1.36 GB
 Not in ASAP Details
cellxgene
sc
A multi-tissue single-cell tumor microenvironment atlas Publication DOI
b617ee1b-f8c8-4de9-b82b-e803ab93550d
Homo sapiens
391'963 cells x 44'649 genes h5ad
2.43 GB
 Not in ASAP Details
cellxgene
sc
PERIHEART Publication DOI
f1606894-59df-4794-a37f-baa7c6fb6de1
Homo sapiens
392'819 cells x 35'477 genes h5ad
2.59 GB
 Not in ASAP Details
cellxgene
sc
altra HC1 subjects Publication DOI
71dfd52f-106b-40f4-a66d-c7dab1142e95
Homo sapiens
394'174 cells x 32'354 genes h5ad
3.41 GB
 Not in ASAP Details
cellxgene
sc
Frozen samples (single nucleus) Publication DOI
34f5307e-7b4d-4a48-b68f-2ba844c6414b
Homo sapiens
394'534 cells x 29'845 genes h5ad
4.25 GB
 Not in ASAP Details
cellxgene
sc
Longitudinal single-nucleus RNA-seq atlas of pediatric high-grade glioma Publication DOI
843c1459-e852-429c-9339-17b5760e7716
Homo sapiens
401'253 cells x 19'089 genes h5ad
4.13 GB
 Not in ASAP Details
cellxgene
sc
An integrated transcriptomic and epigenomic atlas of mouse primary motor cort... Publication DOI
35081d47-99bf-4507-9541-735428df9a9f
Mus musculus
406'187 cells x 22'301 genes h5ad
7.91 GB
 Not in ASAP Details
cellxgene
sc
Human Immune Health Atlas CD8 T cells Publication DOI
b90d4a42-714c-4590-b548-6e75e6c081e8
Homo sapiens
406'730 cells x 32'357 genes h5ad
2.93 GB
 Not in ASAP Details
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