External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
cellxgene
sc
Large intestine - A single-cell transcriptomic atlas characterizes ageing tis... Publication DOI
de4e7a0c-91b2-44e4-b382-87da74c9efb6
Mus musculus
1'887 cells x 17'943 genes h5ad
42.1 MB
 Not in ASAP Details
hca
sc
A human embryonic limb cell atlas resolved in space and time Publication DOI
b176d756-62d8-4933-83a4-8b026380262f::3e69c025-f1ae-4165-a485-c8fba0451c19
Homo sapiens
1'889 cells h5ad
45.3 MB
 Not in ASAP Details
hca
sc
Single-cell analyses of renal cell cancers reveal insights into tumor microen... Publication DOI
7c599029-7a3c-4b5c-8e79-e72c9a9a65fe::f2f82106-5f4f-4606-bba8-84c274eab94f
Homo sapiens
1'896 cells h5
6.8 MB
 Not in ASAP Details
geo
bulk
Characterization of Hypothetical Proteins Reveals Function Modules and Virule...
GSE256222
Pseudomonas aeruginosa PAO1
1'898 samples archive_table
2.43 GB
 Not in ASAP Details
geo
bulk
Commensal-derived acetylcholine enhances mucosal immune education
GSE326449
Homo sapiens; Citrobacter portucalensis; Mus musculus
1'901 samples archive_table
37.8 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA sequencing of mouse hematopoietic stem and progenitor cells Publication DOI
E-GEOD-81682
Mus musculus
1'919 cells h5ad
249 MB
 Not in ASAP Details
hca
sc
Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI
9d97f01f-9313-416e-9b07-560f048b2350::29372676-7b50-4545-ae0b-66660eec46bb
Homo sapiens
1'921 cells h5
7.76 MB
 Not in ASAP Details
hca
sc
Single-cell analyses of renal cell cancers reveal insights into tumor microen... Publication DOI
7c599029-7a3c-4b5c-8e79-e72c9a9a65fe::5cbfe88a-0ef7-49e4-be25-a8b4ee79840c
Homo sapiens
1'953 cells h5
9.48 MB
 Not in ASAP Details
cellxgene
sc
dataset of 'High-resolution single-cell transcriptomic survey of cardiomyocyt... Publication DOI
f3ee7613-b27f-4deb-a5aa-1d4f9a2db963
Homo sapiens
1'971 cells x 32'118 genes h5ad
70.3 MB
 Not in ASAP Details
hca
sc
High-resolution single-cell transcriptomic survey of cardiomyocytes from pati... Publication DOI
b486e0d9-dd8e-462a-b662-9a5bbad5edae::b26c5724-f8ea-4ce2-aed9-d9d26a248e97
Homo sapiens
1'971 cells h5ad
71.2 MB
 Not in ASAP Details
ebi_sc
sc
Comparative analysis of kidney organoid and adult human kidney single cell an... Publication DOI
E-CURD-135
Homo sapiens
1'982 cells h5ad
45 MB
 Not in ASAP Details
hca
sc
Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI
9d97f01f-9313-416e-9b07-560f048b2350::4d811365-5fcc-4dee-b93d-4dfae072ce52
Homo sapiens
1'994 cells h5
7.87 MB
 Not in ASAP Details
broad_scp
sc
Transcriptomic landscape of the blastema niche in regenerating adult axolotl ... Publication DOI
SCP499
 2'013 cells x 59'171 genes counts_table
38.5 MB
 Not in ASAP Details
cellxgene
sc
Aging mouse ovary: Immune cells Publication DOI
c32b7e3d-0e4b-4d13-bc1d-b80200fff6c4
Mus musculus
2'029 cells x 20'053 genes h5ad
55 MB
 Not in ASAP Details
hca
sc
Spatial transcriptomic profiling of human retinoblastoma Publication DOI
1662accf-0e0c-48c4-9314-5aba063f2220::ba8ca8cb-31e8-46ea-aec4-ff5122057a1f
Homo sapiens
2'035 cells h5
4.84 MB
 Not in ASAP Details
cellxgene
sc
74 years old female - Airway Wash (8 days post-intubation) Publication DOI
731e6380-879f-4b0b-9a1f-2150208852ef
Homo sapiens
2'065 cells x 32'393 genes h5ad
30.8 MB
 Not in ASAP Details
cellxgene
sc
Endothelial - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
3e87b1fa-472a-401c-8fa8-f31c10437d5f
Homo sapiens
2'069 cells x 35'483 genes h5ad
32 MB
 Not in ASAP Details
cellxgene
sc
Bronchial scRNA-Seq Dataset Publication DOI
d2bc2703-a9b5-4949-b85d-61da7b9961b1
Homo sapiens
2'075 cells x 23'572 genes h5ad
37.1 MB
 Not in ASAP Details
cellxgene
sc
Adult bladder immune subset Publication DOI
601c7454-17ff-432c-8e0d-902bfddb8013
Homo sapiens
2'094 cells x 35'459 genes h5ad
33 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA-seq of microglia cells isolated from the hippocampus of a mou... Publication DOI
E-GEOD-103334
Mus musculus
2'094 cells h5ad
123 MB
 Not in ASAP Details
cellxgene
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra -... Publication DOI
ea426edb-4e86-4c53-ab17-5b952d94a31e
Homo sapiens
2'113 cells x 22'489 genes h5ad
17.2 MB
 Not in ASAP Details
broad_scp
sc
FoxP3- CD4+ Tconv cells and FoxP3+ CD4+ Treg cells from secondary lymphoid or...
SCP180
 2'116 cells x 23'725 genes counts_table
2.36 MB
 Not in ASAP Details
ebi_sc
sc
Single cell RNA-seq of cancer stem cells from patients with chronic myeloid l... Publication DOI
E-GEOD-76312
Homo sapiens
2'120 cells h5ad
270 MB
 Not in ASAP Details
cellxgene
sc
A Single-Cell Transcriptome Atlas of the Human Pancreas Publication DOI
b07e5164-baf6-43d2-bdba-5a249d0da879
Homo sapiens
2'126 cells x 15'643 genes h5ad
50.6 MB
 Not in ASAP Details
broad_scp
sc
Single-cell RNA-seq reveals changes in cell cycle and differentiation program... Publication DOI
SCP14
 2'128 cells x 23'366 genes counts_table
247 MB
 Not in ASAP Details
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