External catalog

Candidate datasets from CELLxGENE, Bgee, HCA, and GEO. Create an ASAP project from an entry that is not imported yet.

Reset 13988 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
WB_MERFISH_animal3_sagittal Publication DOI
20de7fd1-ab21-45b8-a1e2-f7b36261f8e2
Mus musculus
2'081'549 cells x 1'120 genes h5ad
1.34 GB
 Not in ASAP Details
cellxgene
sc
WB_imputation_animal3_sagittal Publication DOI
77d2f8a2-5a8e-462d-b58f-9de06a54e51a
Mus musculus
2'081'549 cells x 31'729 genes h5ad
47 GB
 Not in ASAP Details
cellxgene
sc
WB_imputation_animal1_coronal_posterior Publication DOI
c52b5b51-81ed-4664-aa38-544c217798e3
Mus musculus
2'082'236 cells x 31'729 genes h5ad
45.1 GB
 Not in ASAP Details
cellxgene
sc
WB_imputation_animal1_coronal_anterior Publication DOI
1be0b205-3c6b-462b-8746-aaa0fd6be86b
Mus musculus
2'085'634 cells x 31'729 genes h5ad
45.8 GB
 Not in ASAP Details
cellxgene
sc
Parkinson's disease Publication DOI
d3cb449b-c2b1-4b50-a7f1-21203535fe61
Homo sapiens
2'096'155 cells x 17'266 genes h5ad
28.4 GB
 Not in ASAP Details
cellxgene
sc
Major cell cluster: CNS neurons Publication DOI
606bd36a-be20-4103-827f-e8b4b3e477fc
Mus musculus
2'106'206 cells x 45'525 genes h5ad
24.7 GB
 Not in ASAP Details
cellxgene
sc
Integrated HBCA Publication DOI
55003f67-c494-46f1-83fb-902745646379
Homo sapiens
2'122'065 cells x 15'153 genes h5ad
18 GB
 Not in ASAP Details
cellxgene
sc
An integrated cell atlas of the human lung in health and disease (full) Publication DOI
9f222629-9e39-47d0-b83f-e08d610c7479
Homo sapiens
2'282'447 cells x 55'329 genes h5ad
20.4 GB
 Not in ASAP Details
cellxgene
sc
All neurons Publication DOI
8e10f1c4-8e98-41e5-b65f-8cd89a887122
Homo sapiens
2'480'956 cells x 58'232 genes h5ad
30.6 GB
 Not in ASAP Details
cellxgene
sc
A single-cell multi-omic atlas spanning the adult rhesus macaque brain Publication DOI
d87ba7ec-fddf-4141-abfd-1d69e8427a42
Macaca mulatta
2'583'967 cells x 29'060 genes h5ad
5.28 GB
 Not in ASAP Details
hca
sc
Human distal lung maps and lineage hierarchies reveal a bipotent progenitor Publication DOI
e5fe8274-3769-4d7d-aa35-6d33c226ab43::0199c190-75a3-44b2-b480-98cc5c6f7a1c
Homo sapiens
2'592'149 cells h5
104 MB
 Not in ASAP Details
cellxgene
sc
Sound Life Older Adult Females, CMV-positive Publication DOI
aa32098f-f7b0-43f2-a00a-601d190aae94
Homo sapiens
2'596'111 cells x 32'357 genes h5ad
9.52 GB
 Not in ASAP Details
cellxgene
sc
Sound Life Young Adult Females, CMV-negative Publication DOI
46104f0b-9af5-466a-ae0f-56b8dc1969a2
Homo sapiens
2'616'824 cells x 32'357 genes h5ad
9.59 GB
 Not in ASAP Details
cellxgene
sc
Whole dataset: Normalized subset 4 Publication DOI
b47eaa46-508d-4817-8a75-5bece9ea30f9
Mus musculus
2'857'008 cells x 45'525 genes h5ad
31.9 GB
 Not in ASAP Details
cellxgene
sc
Whole dataset: Normalized subset 3 Publication DOI
e6a47f6f-ae9a-41ff-a6f7-5f9b9dbd3e7f
Mus musculus
2'860'375 cells x 45'525 genes h5ad
31.9 GB
 Not in ASAP Details
cellxgene
sc
Whole dataset: Normalized subset 1 Publication DOI
a91d5064-aba3-4688-9fcd-6187b2f435a4
Mus musculus
2'860'465 cells x 45'525 genes h5ad
31.9 GB
 Not in ASAP Details
cellxgene
sc
Whole dataset: Normalized subset 2 Publication DOI
0bce33ed-455c-4e12-93f8-b7b04a2de4a1
Mus musculus
2'863'559 cells x 45'525 genes h5ad
31.9 GB
 Not in ASAP Details
hca
sc
Human distal lung maps and lineage hierarchies reveal a bipotent progenitor Publication DOI
e5fe8274-3769-4d7d-aa35-6d33c226ab43::9c8bf634-d516-43e8-b401-ebd8a64767ea
Homo sapiens
2'993'954 cells h5
107 MB
 Not in ASAP Details
hca
sc
Human distal lung maps and lineage hierarchies reveal a bipotent progenitor Publication DOI
e5fe8274-3769-4d7d-aa35-6d33c226ab43::b9394785-0486-4ba9-a679-62800f6f01fd
Homo sapiens
3'005'916 cells h5
100 MB
 Not in ASAP Details
cellxgene
sc
snRNA-seq of human retina - all cells Publication DOI
d6505c89-c43d-4c28-8c4f-7351a5fd5528
Homo sapiens
3'177'310 cells x 35'475 genes h5ad
35.1 GB
 Not in ASAP Details
cellxgene
sc
Major cell cluster: Mesoderm Publication DOI
dcfa2614-7ca7-4d82-814c-350626eccb26
Mus musculus
3'267'338 cells x 45'525 genes h5ad
37.3 GB
 Not in ASAP Details
cellxgene
sc
All cells Publication DOI
ff4235bb-1cdf-4dcf-a13a-dc4f32244400
Homo sapiens
3'758'514 cells x 18'063 genes h5ad
37.4 GB
 Not in ASAP Details
cellxgene
sc
The single-cell Colorectal Cancer Atlas -- core atlas Publication DOI
05a8c945-bc12-414f-960d-a31943bbcdd1
Homo sapiens
3'790'266 cells x 28'127 genes h5ad
28.8 GB
 Not in ASAP Details
cellxgene
sc
Crownlands Gateway — Olfactory + Respiratory Single-Cell Atlas (v1) Publication DOI
16c13603-a36e-467a-a8e8-3d118f2eef45
Homo sapiens
4'028'275 cells x 18'127 genes h5ad
25.8 GB
 Not in ASAP Details
cellxgene
sc
Survey of human embryonic development Publication DOI
f7c1c579-2dc0-47e2-ba19-8165c5a0e353
Homo sapiens
4'062'980 cells x 45'676 genes h5ad
18.7 GB
 Not in ASAP Details
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