External catalog

Candidate datasets from CELLxGENE, Bgee, HCA, and GEO. Create an ASAP project from an entry that is not imported yet.

Reset 13988 candidates
Source Dataset Matrix Format ASAP Actions
cellxgene
sc
MRCA: scRNA-seq of the mouse retina - amacrine cell subclass Publication DOI
a34c5975-4191-4c0b-b970-f92ee9a6aca2
Mus musculus
43'823 cells x 31'671 genes h5ad
427 MB
 Not in ASAP Details
cellxgene
sc
Organoid - Cell Types of the Human Retina and Its Organoids at Single-Cell Re... Publication DOI
7e7f63c5-d964-40be-83de-ecbcccafd233
Homo sapiens
43'857 cells x 55'446 genes h5ad
377 MB
 Not in ASAP Details
cellxgene
sc
Major cell cluster: B cells Publication DOI
fca9660b-74b5-4172-a554-212a03d54fc6
Mus musculus
44'352 cells x 45'525 genes h5ad
328 MB
 Not in ASAP Details
cellxgene
sc
Spatial transcriptomics in the healthy human kidney: Puck_200903_13 Publication DOI
88b7da92-178d-4f27-bc18-b0165b256c67
Homo sapiens
44'588 cells x 26'491 genes h5ad
85.8 MB
 Not in ASAP Details
cellxgene
sc
Single-cell atlas of peripheral immune response to SARS-CoV-2 infection Publication DOI
456e8b9b-f872-488b-871d-94534090a865
Homo sapiens
44'721 cells x 24'505 genes h5ad
207 MB
 Not in ASAP Details
cellxgene
sc
Supercluster: LAMP5-LHX6 and Chandelier Publication DOI
8f48c031-6692-4c82-b6c2-e4ad35cbc0aa
Homo sapiens
45'118 cells x 58'232 genes h5ad
509 MB
 Not in ASAP Details
cellxgene
sc
L6 IT - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
de104f7e-14fa-4795-bd19-b5ee2c1563e0
Homo sapiens
45'252 cells x 35'483 genes h5ad
1.61 GB
 Not in ASAP Details
cellxgene
sc
white matter - all cells Publication DOI
c05e6940-729c-47bd-a2a6-6ce3730c4919
Homo sapiens
45'528 cells x 32'902 genes h5ad
414 MB
 Not in ASAP Details
cellxgene
sc
T cells from gastric cancer patients Publication DOI
ca140407-efd4-48e3-a040-524b8a7752cc
Homo sapiens
45'698 cells x 35'458 genes h5ad
408 MB
 Not in ASAP Details
cellxgene
sc
T cells Publication DOI
486486d4-9462-43e5-9249-eb43fa5a49a6
Homo sapiens
46'140 cells x 24'540 genes h5ad
1.72 GB
 Not in ASAP Details
cellxgene
sc
Dissection: Thalamus (THM) - lateral nuclear complex of thalamus (LNC) - Pulv... Publication DOI
ecd9230d-c571-4dab-abd3-8b54c74833f0
Homo sapiens
46'453 cells x 58'232 genes h5ad
450 MB
 Not in ASAP Details
cellxgene
sc
Single-cell multiomic profiling of human lungs across age groups Publication DOI
3de0ad6d-4378-4f62-b37b-ec0b75a50d94
Homo sapiens
46'500 cells x 25'799 genes h5ad
325 MB
 Not in ASAP Details
cellxgene
sc
Mouse dermal fibroblast atlas Publication DOI
b2dd6bc9-36ed-4cd4-a2b3-51f6a2386afa
Mus musculus
46'549 cells x 29'831 genes h5ad
1.09 GB
 Not in ASAP Details
cellxgene
sc
IBD and HC 10x Single-cell transcriptomics data Publication DOI
9bfecd44-e6b5-4072-9b64-cb7f0a117f88
Homo sapiens
46'700 cells x 32'354 genes h5ad
175 MB
 Not in ASAP Details
cellxgene
sc
Tabula Sapiens - Muscle Publication DOI
1c9eb291-6d31-47e1-96b2-129b5e1ae64f
Homo sapiens
46'772 cells x 60'606 genes h5ad
1.91 GB
 Not in ASAP Details
cellxgene
sc
A single-cell multi-omic atlas spanning the adult rhesus macaque brain (cell ... Publication DOI
e25e50f8-ed2a-4bb0-b6b6-1a4f4ea5af37
Macaca mulatta
46'814 cells x 29'060 genes h5ad
68.7 MB
 Not in ASAP Details
cellxgene
sc
progressive_plasticity_during_crc_metastasis_epithelial Publication DOI
829a3cd1-a466-49f1-b2e9-d3f6b7f392e2
Homo sapiens
47'107 cells x 25'344 genes h5ad
715 MB
 Not in ASAP Details
cellxgene
sc
L6 IT - DLPFC: Seattle Alzheimer's Disease Atlas (SEA-AD) Publication DOI
6437bc9c-16cb-46c8-8f79-9a7384a0212a
Homo sapiens
47'373 cells x 35'483 genes h5ad
2.39 GB
 Not in ASAP Details
cellxgene
sc
Dissection: Pons (Pn) - efferent nuclei of cranial nerves in pons - PnEN Publication DOI
900fdf13-150d-4695-9f8c-4c09105ba2eb
Homo sapiens
47'416 cells x 58'232 genes h5ad
408 MB
 Not in ASAP Details
cellxgene
sc
Urethral luminal epithelia are castration-insensitive cells of the proximal p... Publication DOI
2aef80da-acb4-4e15-8f7d-6c0322b86b2f
Mus musculus
47'435 cells x 19'344 genes h5ad
380 MB
 Not in ASAP Details
cellxgene
sc
All annotated cells from infection 1 Publication DOI
2ac76f1b-43ef-4271-8686-2f165570989f
Homo sapiens
48'226 cells x 57'509 genes h5ad
857 MB
 Not in ASAP Details
cellxgene
sc
Cellular and transcriptional diversity over the course of human lactation Publication DOI
0920bcb8-4b3a-4e9d-a353-56f529fd3b32
Homo sapiens
48'478 cells x 31'876 genes h5ad
473 MB
 Not in ASAP Details
cellxgene
sc
Single cell RNA-seq data from normal adult kidney tissue
0b4a15a7-4e9e-4555-9733-2423e5c66469
Homo sapiens
48'783 cells x 36'020 genes h5ad
633 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Thalamus (THM) - posterior nuclear complex of thalamus (PoN) - la... Publication DOI
d2514440-d747-4d8d-b2c7-b58ef8b71fbe
Homo sapiens
48'856 cells x 58'232 genes h5ad
475 MB
 Not in ASAP Details
cellxgene
sc
Single-cell gene expression profiling of SARS-CoV-2 infected human cell lines... Publication DOI
4b9e0a15-c006-45d9-860f-b8a43ccf7d9d
Homo sapiens
48'890 cells x 16'160 genes h5ad
4.06 GB
 Not in ASAP Details
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