External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
ebi_sc
sc
scRNAseq of Cyp11a1-expressing cells from mouse melanoma model derived tumors Publication DOI
E-MTAB-8509
Mus musculus
2'810 cells h5ad
235 MB
 Not in ASAP Details
cellxgene
sc
Spatiotemporal analysis of human intestinal development at single-cell resolu... Publication DOI
58679288-9ecc-4647-9781-12a3a8f8c6fd
Homo sapiens
2'833 cells x 32'330 genes h5ad
32.1 MB
 Not in ASAP Details
cellxgene
sc
74 years old female - Airway Wash (6 days post-intubation) Publication DOI
ce009dc1-ac57-4386-b72f-5c575701c253
Homo sapiens
2'834 cells x 32'393 genes h5ad
27.7 MB
 Not in ASAP Details
hca
sc
Single-cell analyses of renal cell cancers reveal insights into tumor microen... Publication DOI
7c599029-7a3c-4b5c-8e79-e72c9a9a65fe::8fd04612-43b5-4244-a34e-be8b3f776530
Homo sapiens
2'853 cells h5
13 MB
 Not in ASAP Details
cellxgene
sc
Liver - A single-cell transcriptomic atlas characterizes ageing tissues in th... Publication DOI
4546e757-34d0-4d17-be06-538318925fcd
Mus musculus
2'859 cells x 21'025 genes h5ad
66.6 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA sequencing of the cut and uncut caudal fin of zebrafish larvae Publication DOI
E-GEOD-158851
Danio rerio
2'860 cells h5ad
76 MB
 Not in ASAP Details
cellxgene
sc
Horizontal cells of the human fovea and peripheral retina Publication DOI
2f6a20f1-173d-4b8d-860b-c47ffea120fa
Homo sapiens
2'868 cells x 32'040 genes h5ad
18.9 MB
 Not in ASAP Details
cellxgene
sc
E9.0: Puck_220615_38 Publication DOI
024593dd-d237-4eaa-aff2-9c9d87be595e
Mus musculus
2'872 cells x 27'368 genes h5ad
12.8 MB
 Not in ASAP Details
hca
sc
Single-cell analyses of renal cell cancers reveal insights into tumor microen... Publication DOI
7c599029-7a3c-4b5c-8e79-e72c9a9a65fe::0910ec3b-c8d5-4dad-bf2e-fa21b7016b98
Homo sapiens
2'872 cells h5
4.91 MB
 Not in ASAP Details
hca
sc
Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19 Publication DOI
08fb10df-32e5-456c-9882-e33fcd49077a::53977009-55d7-4acf-924b-0fac0d7a977a
Homo sapiens
2'879 cells h5
7.85 MB
 Not in ASAP Details
hca
sc
A human embryonic limb cell atlas resolved in space and time Publication DOI
b176d756-62d8-4933-83a4-8b026380262f::c5e2877b-4ebd-46b5-8ff9-697af465b129
Homo sapiens
2'884 cells h5ad
59.5 MB
 Not in ASAP Details
hca
sc
Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI
9d97f01f-9313-416e-9b07-560f048b2350::db8368a3-efcc-4389-97db-361bd8565096
Homo sapiens
2'886 cells h5
8.96 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_230714_28' Publication DOI
47df505e-10d4-49f0-90d3-1e77c62e985c
Mus musculus
2'891 cells x 29'286 genes h5ad
9.1 MB
 Not in ASAP Details
cellxgene
sc
thymus scRNA-seq atlas - myeloid p1 subset Publication DOI
54999653-92b5-40e8-8438-0456ddb62cb2
Homo sapiens
2'923 cells x 35'477 genes h5ad
19.4 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq analysis of human pancreas from healthy individuals and t... Publication DOI
E-MTAB-5061
Homo sapiens
2'942 cells h5ad
342 MB
 Not in ASAP Details
hca
sc
Nuclei multiplexing with barcoded antibodies for single-nucleus genomics. Publication DOI
dc1a41f6-9e09-42a6-959e-3be23db6da56::c7c99747-502a-4d0a-b5b8-c56533fb9eff
Homo sapiens
2'945 cells mtx
37.8 MB
 Not in ASAP Details
broad_scp
sc
In vitro morphine treatment: Single cell transcriptomics reveals opioid usage...
SCP591
 2'946 cells x 15'982 genes counts_table
22.3 MB
 Not in ASAP Details
cellxgene
sc
Myeloid SCLC samples only Publication DOI
b47cf863-d90d-4fe5-a1eb-1a4785a3e329
Homo sapiens
2'951 cells x 22'021 genes h5ad
327 MB
 Not in ASAP Details
cellxgene
sc
HTAPP-364-SMP-1321 Slide-seq Publication DOI
e2824739-ea79-4efd-9434-3bec079b55d3
Homo sapiens
2'958 cells x 11'673 genes h5ad
20.6 MB
 Not in ASAP Details
cellxgene
sc
CortexCulturesOneMonthInVitro Publication DOI
6fc37633-13f5-4bf0-af95-52808143bffd
Homo sapiens
2'988 cells x 32'397 genes h5ad
22.8 MB
 Not in ASAP Details
ebi_sc
sc
scRNA-seq of Mus musculus subcutaneous Lin- cells derived from the subcutaneo... Publication DOI
E-MTAB-6677
Mus musculus
2'992 cells h5ad
132 MB
 Not in ASAP Details
cellxgene
sc
Mesenteric fat pad — A single-cell transcriptomic atlas characterizes ageing ... Publication DOI
821c79aa-044e-40cf-b331-0fe3edd48019
Mus musculus
3'014 cells x 21'025 genes h5ad
70.8 MB
 Not in ASAP Details
cellxgene
sc
Adult ureter stromal subset Publication DOI
305c1196-76b3-42d1-818f-2694d01dbd97
Homo sapiens
3'045 cells x 35'459 genes h5ad
43.8 MB
 Not in ASAP Details
cellxgene
sc
E9.0: Puck_220615_37 Publication DOI
2485dbb4-5c85-4ae3-99a0-1122b5876372
Mus musculus
3'052 cells x 27'368 genes h5ad
14 MB
 Not in ASAP Details
cellxgene
sc
Tabula Sapiens - Ear Publication DOI
d45aca3a-ddb8-4185-a462-eff1e0c7af2e
Homo sapiens
3'055 cells x 60'606 genes h5ad
172 MB
 Not in ASAP Details
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