External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	shRNA RNA-seq from K562 (ENCSR628JYB) GSE88416 Homo sapiens	2 samples	archive_table 4.91 GB	Not in ASAP	Details
geo bulk	shRNA RNA-seq from K562 (ENCSR984CLJ) GSE88687 Homo sapiens	2 samples	archive_table 5.04 GB	Not in ASAP	Details
geo bulk	shRNA RNA-seq from K562 (ENCSR745WVZ) GSE88506 Homo sapiens	2 samples	archive_table 5.08 GB	Not in ASAP	Details
geo bulk	shRNA RNA-seq from K562 (ENCSR620PUP) GSE88411 Homo sapiens	2 samples	archive_table 5.1 GB	Not in ASAP	Details
geo bulk	shRNA RNA-seq from K562 (ENCSR118XYK) GSE88051 Homo sapiens	2 samples	archive_table 5.13 GB	Not in ASAP	Details
geo bulk	polyA mRNA RNA-seq from GM12878 (ENCSR000CPO) GSE90233 Homo sapiens	2 samples	archive_table 5.16 GB	Not in ASAP	Details
geo bulk	polyA mRNA RNA-seq from MCF-7 (ENCSR000CTO) GSE90261 Homo sapiens	2 samples	archive_table 5.16 GB	Not in ASAP	Details
geo bulk	total RNA-seq from HepG2 (ENCSR468ION) GSE78650 Homo sapiens	2 samples	archive_table 5.24 GB	Not in ASAP	Details
geo bulk	total RNA-seq from dermis microvascular lymphatic vessel endothelial cell (EN... GSE78538 Homo sapiens	2 samples	archive_table 5.26 GB	Not in ASAP	Details
geo bulk	total RNA-seq from vein endothelial cell (ENCSR000CUG) GSE78609 Homo sapiens	2 samples	archive_table 5.27 GB	Not in ASAP	Details
geo bulk	total RNA-seq from fibroblast of the aortic adventitia (ENCSR000CUJ) GSE78612 Homo sapiens	2 samples	archive_table 5.3 GB	Not in ASAP	Details
geo bulk	total RNA-seq from liver (ENCSR000AFB) GSE78569 Homo sapiens	2 samples	archive_table 5.32 GB	Not in ASAP	Details
geo bulk	polyA mRNA RNA-seq from K562 (ENCSR000AEO) GSE78559 Homo sapiens	2 samples	archive_table 5.34 GB	Not in ASAP	Details
geo bulk	total RNA-seq from camera-type eye (ENCSR000AFO) GSE78582 Homo sapiens	2 samples	archive_table 5.35 GB	Not in ASAP	Details
geo bulk	total RNA-seq from subcutaneous preadipocyte (ENCSR000CUM) GSE78615 Homo sapiens	2 samples	archive_table 5.38 GB	Not in ASAP	Details
geo bulk	Profiling of differential allelic expression in mouse placenta from reciproca... GSE29690 Mus musculus	2 samples	archive_table 5.38 GB	Not in ASAP	Details
geo bulk	polyA mRNA RNA-seq from keratinocyte (ENCSR000CPJ) GSE78592 Homo sapiens	2 samples	archive_table 5.39 GB	Not in ASAP	Details
geo bulk	total RNA-seq from dermis lymphatic vessel endothelial cell (ENCSR000AAJ) GSE78537 Homo sapiens	2 samples	archive_table 5.4 GB	Not in ASAP	Details
geo bulk	total RNA-seq from pericyte cell (ENCSR000CTX) GSE78604 Homo sapiens	2 samples	archive_table 5.43 GB	Not in ASAP	Details
geo bulk	total RNA-seq from smooth muscle cell of the umbilical artery (ENCSR000AAU) GSE78548 Homo sapiens	2 samples	archive_table 5.45 GB	Not in ASAP	Details
geo bulk	total RNA-seq from pulmonary artery endothelial cell (ENCSR000AAM) GSE78540 Homo sapiens	2 samples	archive_table 5.46 GB	Not in ASAP	Details
geo bulk	shRNA RNA-seq from K562 (ENCSR718EWL) GSE177535 Homo sapiens	2 samples	archive_table 5.49 GB	Not in ASAP	Details
geo bulk	polyA depleted RNA-seq from GM12878 (ENCSR000CQF) GSE90245 Homo sapiens	2 samples	archive_table 5.54 GB	Not in ASAP	Details
geo bulk	total RNA-seq from frontal cortex (ENCSR000AEY) GSE78566 Homo sapiens	2 samples	archive_table 5.64 GB	Not in ASAP	Details
geo bulk	total RNA-seq from bladder microvascular endothelial cell (ENCSR000AAB) GSE78529 Homo sapiens	2 samples	archive_table 5.72 GB	Not in ASAP	Details