External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	The intestinal crypt is a potential reservoir for hepatitis E virus infections GSE303209 Homo sapiens	3 samples	archive_table 1.59 GB	Not in ASAP	Details
geo bulk	Heparan sulfate Sulfatases are essential for the patterning of stem cell–deri... GSE300452 Homo sapiens	3 samples	archive_table 1.8 GB	Not in ASAP	Details
geo bulk	EpCAM Supports Exit from Pluripotency of Embryonic Stem Cells via Eomes GSE318465 Mus musculus	3 samples	archive_table 2.38 GB	Not in ASAP	Details
geo bulk	LGR5⁺ Stem Cells Maintain Apex Position in Regenerative Hierarchy of the Inte... GSE304776 Mus musculus	3 samples	archive_table 6.54 GB	Not in ASAP	Details
geo bulk	Rat thymic epithelium-free areas are specialized medullary niches enriched fo... GSE333693 Rattus norvegicus	3 samples	archive_table 12.6 GB	Not in ASAP	Details
geo bulk	RNA sequencing analysis of transcriptomic changes in human umbilical vein end... GSE311744 Homo sapiens	4 samples	counts_table 15 KB	Not in ASAP	Details
geo bulk	Selective targeting of a histone-like silencer Sfx to the R6K conjugal transf... GSE319657 Escherichia coli K-12	4 samples	counts_table 38.8 KB	Not in ASAP	Details
geo bulk	Using Rhodopseudomonas palustris as a model bacterium to study fungal-bacteri... GSE311457 Rhodopseudomonas palustris	4 samples	counts_table 51.2 KB	Not in ASAP	Details
geo bulk	Butyrate kinase (Buk) links branched-chain fatty acid biosynthesis, cold adap... GSE334468 Listeria monocytogenes	4 samples	counts_table 54.4 KB	Not in ASAP	Details
geo bulk	Aspartic acid, cysteine, and glutamic acid prevent biofilm formation and disr... GSE327078 Candida albicans	4 samples	counts_table 56.2 KB	Not in ASAP	Details
geo bulk	Ketogenic diet mediates intestinal tumorigenesis through lipids not ketones GSE334093 Mus musculus	4 samples	counts_table 64 KB	Not in ASAP	Details
geo bulk	The Ess1 prolyl isomerase represses TERRA transcription and promotes telomere... GSE308552 Saccharomyces cerevisiae	4 samples	counts_table 76 KB	Not in ASAP	Details
geo bulk	PRMT5-mediated intron retention triggers innate and adaptive immunity against... GSE327671 Homo sapiens	4 samples	archive_table 80 KB	Not in ASAP	Details
geo bulk	Effects of alternative sweeteners on lactic acid bacteria growth and the anti... GSE295793 Escherichia coli O157:H7	4 samples	counts_table 88.4 KB	Not in ASAP	Details
geo bulk	RNA seq - comparing ingB mutant to AF293 - Genetic mechanisms of azole toler... GSE314107 Aspergillus fumigatus Af293	4 samples	counts_table 103 KB	Not in ASAP	Details
geo bulk	Analysis of the role of RPS26 during translation in HEK293T RPS26 p.100_M115 ... GSE294217 Homo sapiens	4 samples	counts_table 112 KB	Not in ASAP	Details
geo bulk	Mitochondrial targeted metformin stimulates ER stress-mediated apoptosis in h... GSE304335 Homo sapiens	4 samples	counts_table 117 KB	Not in ASAP	Details
geo bulk	The chromatin remodeling factor Arp9 modulates the drug-resistance of Aspergi... GSE279121 Aspergillus flavus	4 samples	counts_table 129 KB	Not in ASAP	Details
geo bulk	A novel Plasmodium cytosolic protein regulates parasite fitness, gametocytoge... GSE328775 Plasmodium berghei	4 samples	counts_table 129 KB	Not in ASAP	Details
geo bulk	Transcriptomic analysis of (S)-1,3-butanediol degradation pathway in Pseudomo... GSE333646 Pseudomonas putida KT2440	4 samples	counts_table 147 KB	Not in ASAP	Details
geo bulk	RbFox2 is a RhoBTB1-Cullin-3 Target in Vascular Smooth Muscle Regulating Arte... GSE305901 Rattus norvegicus	4 samples	counts_table 148 KB	Not in ASAP	Details
geo bulk	Transcriptome profiling of budding yeast expressing a mutant form of the SUMO... GSE290842 Saccharomyces cerevisiae	4 samples	counts_table 152 KB	Not in ASAP	Details
geo bulk	Mutation of RNA polymerase sigma factor (RpoD) confers broad‑spectrum antimic... GSE329627 Escherichia coli K-12	4 samples	archive_table 170 KB	Not in ASAP	Details
geo bulk	Parkinson’s disease microglia induce endogenous α-synuclein pathology in pati... GSE299260 Homo sapiens	4 samples	counts_table 184 KB	Not in ASAP	Details
geo bulk	Transcriptomic analysis of Dunaliella salina cultivated in Sistan deep water GSE339343 Dunaliella salina	4 samples	counts_table 187 KB	Not in ASAP	Details