External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Effect of CBP/P300 inhibition on extravillous trophoblast differentiation GSE343715 Homo sapiens	4 samples	counts_table 935 KB	Not in ASAP	Details
geo bulk	Molecular mechanisms of promoter silencing by transcriptional readthrough GSE328413 Mus musculus	4 samples	archive_table 940 KB	Not in ASAP	Details
geo bulk	Impact of SPOP mutations on gene expression in prostate cancer GSE338465 Homo sapiens	4 samples	archive_table 980 KB	Not in ASAP	Details
geo bulk	RNA-seq of the brain and spinal cord of NTDs fetal mice at day 9.5 GSE225346 Mus musculus	4 samples	counts_table 982 KB	Not in ASAP	Details
geo bulk	Lung microbiota coordinates alveolar macrophage and γδ T cell activation agai... GSE309138 Mus musculus	4 samples	counts_table 989 KB	Not in ASAP	Details
geo bulk	TPX2-mediated autophagy maintains cancer stemness in LUAD GSE333531 Homo sapiens	4 samples	counts_table 996 KB	Not in ASAP	Details
geo bulk	Transcriptional competence defines the heterochromatin nucleating potential o... GSE299895 Mus musculus	4 samples	archive_table 1000 KB	Not in ASAP	Details
geo bulk	High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ P... GSE316869 mouse gut metagenome	4 samples	archive_table 1000 KB	Not in ASAP	Details
geo bulk	Chromatin rewiring of β-globin and MYC enhancers by TGF-β1 drives defective e... GSE320600 Homo sapiens	4 samples	archive_table 1010 KB	Not in ASAP	Details
geo bulk	Nascent-seq of HeLa WT and SRSF5 KO cells GSE288960 Homo sapiens	4 samples	archive_table 1010 KB	Not in ASAP	Details
geo bulk	Comparative RNA-seq analysis of PM2.5-induced transcriptional responses in wi... GSE336715 Mus musculus	4 samples	counts_table 1010 KB	Not in ASAP	Details
geo bulk	An EGFR Co-amplified Long Noncoding RNA HELDR Promotes Glioblastoma Malignanc... GSE286319 Homo sapiens	4 samples	archive_table 1.02 MB	Not in ASAP	Details
geo bulk	RNA-seq analysis of tumor-infiltrating effector T cells isolated from subcuta... GSE250248 Mus musculus	4 samples	archive_table 1.04 MB	Not in ASAP	Details
geo bulk	High Expression of TMEM161A in Colorectal Cancer is Associated with Tumor Pro... GSE309797 Homo sapiens	4 samples	archive_table 1.06 MB	Not in ASAP	Details
geo bulk	CLK1 Promotes MDSC Trafficking and Reprograms the Tumor Microenvironment by a... GSE308355 Mus musculus	4 samples	counts_table 1.08 MB	Not in ASAP	Details
geo bulk	Posterior explants of Stage 26 embryos treated with picrotoxins GSE318140 Xenopus laevis	4 samples	counts_table 1.08 MB	Not in ASAP	Details
geo bulk	Acetate, a short-chain fatty acid, inhibits Coxiella burnetii replication via... GSE342662 Homo sapiens	4 samples	counts_table 1.11 MB	Not in ASAP	Details
geo bulk	Effect of SREBP1 cDNA overexpression on gene expression in LN229 cells GSE320462 Homo sapiens	4 samples	counts_table 1.11 MB	Not in ASAP	Details
geo bulk	Myelin basic protein is an RNA chaperone in microglial nuclear retro-transport GSE330818 Rattus norvegicus	4 samples	counts_table 1.12 MB	Not in ASAP	Details
geo bulk	Super-enhancer-driven MAB21L2 promotes neuroblastoma progression GSE291753 Homo sapiens	4 samples	counts_table 1.15 MB	Not in ASAP	Details
geo bulk	The MEK/MYC/p21 Axis Drives Senescence Bypass and BCL-xL Dependence in Vincri... GSE325716 Homo sapiens	4 samples	counts_table 1.17 MB	Not in ASAP	Details
geo bulk	ETS1 Orchestrates a Hybrid EMT Program Driving in vivo Metastasis and Immune ... GSE300573 Homo sapiens	4 samples	counts_table 1.18 MB	Not in ASAP	Details
geo bulk	Effects of OGT-ISS deletion on gene expression in NK92 cells GSE281387 Homo sapiens	4 samples	counts_table 1.21 MB	Not in ASAP	Details
geo bulk	RNA sequences from Human Muscle Stem Cells across Different Passages GSE325420 Homo sapiens	4 samples	counts_table 1.28 MB	Not in ASAP	Details
geo bulk	Activating and repressive FOX family proteins regulate HSV-1 chromatin and th... GSE299792 Homo sapiens	4 samples	archive_table 1.28 MB	Not in ASAP	Details