External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	RNA-Sequece Analysis of si-YBX1and SI-NC IN 231 CELLS GSE225812 Homo sapiens	2 samples	archive_table 1020 KB	Not in ASAP	Details
geo bulk	Revealing the underlying regulatory mechanism of LINC00313 in Osimertinib-res... GSE228049 Homo sapiens	2 samples	archive_table 1020 KB	Not in ASAP	Details
geo bulk	SB431452 affects extracellular matrix during induction of hiPSC-derived gastr... GSE178441 Homo sapiens	2 samples	archive_table 1.01 MB	Not in ASAP	Details
geo bulk	Changes in mRNA transcripts in retina of miR-29a knockout mice GSE186369 Mus musculus	2 samples	archive_table 1.02 MB	Not in ASAP	Details
geo bulk	Gene expression profile of HSCs and ANGPTL2 treated HSCs Transcriptomes GSE169107 Homo sapiens	2 samples	counts_table 1.02 MB	Not in ASAP	Details
geo bulk	Transplantation of patient-specific bile duct bioengineered with chemically r... GSE152809 Homo sapiens	2 samples	archive_table 1.03 MB	Not in ASAP	Details
geo bulk	CRISPR RNA-seq from K562 (ENCSR974RYS) GSE177987 Homo sapiens	2 samples	counts_table 1.05 MB	Not in ASAP	Details
geo bulk	Tumor-infiltrating lymphocytes-derived CD8+ clonotypes infiltrate the tumor t... GSE285281 Homo sapiens	2 samples	archive_table 1.05 MB	Not in ASAP	Details
geo bulk	CRISPR RNA-seq from K562 (ENCSR580TGX) GSE177428 Homo sapiens	2 samples	counts_table 1.06 MB	Not in ASAP	Details
geo bulk	Quantitive analysis of transcriptome alteration after treatment with J007(a h... GSE185925 Mus musculus	2 samples	counts_table 1.08 MB	Not in ASAP	Details
geo bulk	RNA-seq Analysis of mRNA profiles in β-Gal-overexpressing, and HuR-overexpres... GSE152542 Mus musculus	2 samples	archive_table 1.08 MB	Not in ASAP	Details
geo bulk	Nucleolar RNA-seq in macrophages GSE95527 Mus musculus	2 samples	archive_table 1.08 MB	Not in ASAP	Details
geo bulk	CRISPR RNA-seq from K562 (ENCSR972AZD) GSE177977 Homo sapiens	2 samples	counts_table 1.09 MB	Not in ASAP	Details
geo bulk	Comparision of gene expression in human nucleus pulposus cells under hypoxia ... GSE154162 Homo sapiens	2 samples	counts_table 1.09 MB	Not in ASAP	Details
geo bulk	Tumorigenic effects of TLX over-expression in HEK 293T cells GSE120893 Homo sapiens	2 samples	archive_table 1.09 MB	Not in ASAP	Details
geo bulk	Systematic analysis of effects of naturally occurring insertions and deletion... GSE178079 Mus musculus	2 samples	counts_table 1.09 MB	Not in ASAP	Details
geo bulk	Compendium of functional regulatory variants in human neuropsychiatric diseas... GSE182094 Homo sapiens	2 samples	counts_table 1.1 MB	Not in ASAP	Details
geo bulk	Dmrt2 and Hmx2 direct intercalated cell diversity in the mammalian kidney thr... GSE295893 Homo sapiens	2 samples	archive_table 1.1 MB	Not in ASAP	Details
geo bulk	RNA-sequencing reveals signaling pathways associated with tumor invasion and ... GSE158262 Homo sapiens	2 samples	archive_table 1.1 MB	Not in ASAP	Details
geo bulk	CRISPR RNA-seq from HepG2 (ENCSR284SZO) GSE176996 Homo sapiens	2 samples	counts_table 1.1 MB	Not in ASAP	Details
geo bulk	Global gene expression pattern in human first trimester primary villous cytot... GSE86808 Homo sapiens	2 samples	counts_table 1.1 MB	Not in ASAP	Details
geo bulk	CRISPR RNA-seq from K562 (ENCSR354RSR) GSE177261 Homo sapiens	2 samples	counts_table 1.11 MB	Not in ASAP	Details
geo bulk	Transcrpition landscapes of CD4 T cell exhaustion in response to transplant a... GSE142327 Mus musculus	2 samples	counts_table 1.11 MB	Not in ASAP	Details
geo bulk	Detection of novel fusion transcriptVTI1A-CFAP46 in HHC by RNA-seq GSE105090 Homo sapiens	2 samples	archive_table 1.11 MB	Not in ASAP	Details
geo bulk	shRNA RNA-seq from K562 (ENCSR952OOP) GSE177927 Homo sapiens	2 samples	counts_table 1.14 MB	Not in ASAP	Details