External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Macrophage-Derived IL-18 Drives M1 Polarization via IFN-γ/JAK1-STAT1 Axis to ... GSE337837 Mus musculus	6 samples	counts_table 3.27 MB	Not in ASAP	Details
geo bulk	Effect of deletion of PKM on gene expression in dental epithelium during toot... GSE315538 Mus musculus	6 samples	counts_table 3.29 MB	Not in ASAP	Details
geo bulk	Systemic degradation of repressive transcription factors gates gene expressio... GSE327633 Homo sapiens	6 samples	counts_table 3.3 MB	Not in ASAP	Details
geo bulk	Effect of knockdown PAK5 on gene expression of MB231 cells GSE272259 Homo sapiens	6 samples	counts_table 3.31 MB	Not in ASAP	Details
geo bulk	Ngn3 reprograms late retinal progenitor cells through transcriptional and epi... GSE326387 Mus musculus	6 samples	counts_table 3.31 MB	Not in ASAP	Details
geo bulk	Effect of FADS2 overexpression on gene expression of adipose stem cells GSE315275 Homo sapiens	6 samples	counts_table 3.32 MB	Not in ASAP	Details
geo bulk	RBMXL3 drives transcriptome changes in human TCam-2 cells (RNA-seq data) GSE294696 Homo sapiens	6 samples	counts_table 3.32 MB	Not in ASAP	Details
geo bulk	Systemic degradation of repressive transcription factors gates gene expressio... GSE327631 Homo sapiens	6 samples	counts_table 3.33 MB	Not in ASAP	Details
geo bulk	RNA-seq of the central amygdala of rats with painful diabetic neuropathy GSE322631 Rattus norvegicus	6 samples	counts_table 3.34 MB	Not in ASAP	Details
geo bulk	N6-Methyladenosine-Modified circPICALM Encodes a Protein That Promotes Intrah... GSE291554 Homo sapiens	6 samples	counts_table 3.36 MB	Not in ASAP	Details
geo bulk	TP53INP2 promotes mitophagic degradation of YAP to impede dedifferentiated li... GSE263328 Homo sapiens	6 samples	counts_table 3.37 MB	Not in ASAP	Details
geo bulk	RNA sequencing for amniotic fluid cells of preeclampsia and control rats GSE263922 Rattus norvegicus	6 samples	counts_table 3.38 MB	Not in ASAP	Details
geo bulk	Reduced expression of Semaphorin3A derived from osteoclasts cause lymphatic e... GSE229371 Mus musculus	6 samples	counts_table 3.38 MB	Not in ASAP	Details
geo bulk	hnRNPC engages mature RNAs during metaphase: RNA-seq and fCLIP in proTAME-arr... GSE307226 Homo sapiens	6 samples	archive_table 3.39 MB	Not in ASAP	Details
geo bulk	RNA-seq of control and ALDH3A2-knockdown A549 cells GSE344057 Homo sapiens	6 samples	counts_table 3.4 MB	Not in ASAP	Details
geo bulk	RNA-seq of bronchoalveolar lavage cells from wild-type mice reconstituted wit... GSE313652 Mus musculus	6 samples	counts_table 3.41 MB	Not in ASAP	Details
geo bulk	Next Generation Sequencing Facilitates Quantitative Analysis of WT and edf1 m... GSE260675 Zea mays	6 samples	archive_table 3.42 MB	Not in ASAP	Details
geo bulk	NOD2/NF-κB/NLRP2 signaling axis potentially induces early spontaneous abortio... GSE338498 Homo sapiens	6 samples	counts_table 3.48 MB	Not in ASAP	Details
geo bulk	Ro 08-2750 increases radiation-induced cytotoxicity in DLBCL by dysregulating... GSE301732 Homo sapiens	6 samples	counts_table 3.48 MB	Not in ASAP	Details
geo bulk	Effect of docosahexaenoic acid priming of human adipose-tissue mesenchymal st... GSE328058 Homo sapiens	6 samples	counts_table 3.5 MB	Not in ASAP	Details
geo bulk	Commun Biol . 2026 Apr 2;9(1):726. doi: 10.1038/s42003-026-09975-3. TWEAK-ind... GSE268411 Mus musculus	6 samples	counts_table 3.52 MB	Not in ASAP	Details
geo bulk	Genome-wide Identification of MYB Family and Functional Analysis of EpMYB71 a... GSE328052 Echium plantagineum	6 samples	counts_table 3.56 MB	Not in ASAP	Details
geo bulk	Bulk RNA-seq of alveolar type II epithelial cells from wild-type and Cry1/2 d... GSE313683 Mus musculus	6 samples	counts_table 3.56 MB	Not in ASAP	Details
geo bulk	Transcriptome analysis of KRT15 knockdown in lenvatinib-resistant papillary t... GSE299763 Homo sapiens	6 samples	counts_table 3.58 MB	Not in ASAP	Details
geo bulk	A noncanonical function of SCIMP restricts JAK1 activity to counteract immune... GSE320572 Homo sapiens	6 samples	counts_table 3.59 MB	Not in ASAP	Details