External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Paired CRISPR screens to map gene regulation in cis and trans (RNA-seq) GSE336192 Homo sapiens	8 samples	archive_table 39.1 MB	Not in ASAP	Details
geo bulk	Prolonged KRAS-MAPK Inhibition Induces Interferon-mediated Epithelial-to-Mese... GSE302981 Homo sapiens	8 samples	archive_table 40.5 MB	Not in ASAP	Details
geo bulk	Limited Immune-Mediated Efficacy of Anti-PD-L1/VEGF in EGFR-TKI-Naïve Egfr-Mu... GSE330658 Mus musculus	8 samples	archive_table 40.6 MB	Not in ASAP	Details
geo bulk	A Multi-Omics Network Identifies Neutrophil Elastase-Positive Extracellular V... GSE291638 Homo sapiens	8 samples	archive_table 42 MB	Not in ASAP	Details
geo bulk	Endogenous retroviruses synthesize heterologous chimeric RNAs to reinforce hu... GSE317317 Homo sapiens	8 samples	counts_table 42.9 MB	Not in ASAP	Details
geo bulk	Tailoring a CRISPR/Cas-based Epigenome Editor for Programmable Chromatin Acyl... GSE289257 Homo sapiens	8 samples	archive_table 49.3 MB	Not in ASAP	Details
geo bulk	KLF5 modulates epigenetic modifications driving human pancreatic ductal adeno... GSE290273 Homo sapiens	8 samples	archive_table 53.8 MB	Not in ASAP	Details
geo bulk	LARP6 shapes the mRNA translation of fibrogenic genes [RNA-seq] GSE279064 Homo sapiens	8 samples	archive_table 55.5 MB	Not in ASAP	Details
geo bulk	Myonuclear reprogramming underlies muscle denervation and weakness following ... GSE270868 Homo sapiens	8 samples	archive_table 57.7 MB	Not in ASAP	Details
geo bulk	Single myonuclei RNA-seq on control vs AAV-OPDM mouse models GSE314684 Mus musculus	8 samples	archive_table 64.2 MB	Not in ASAP	Details
geo bulk	Manual curation for improved genome annotation of the functionally extinct no... GSE300824 Ceratotherium simum simum	8 samples	archive_table 64.4 MB	Not in ASAP	Details
geo bulk	CAF drives spheroid formation and pleural dissemination in NSCLC GSE293572 Homo sapiens	8 samples	archive_table 69.1 MB	Not in ASAP	Details
geo bulk	Inflammation- and resolution-programmed myeloid circuits govern therapeutic r... GSE294252 Mus musculus	8 samples	archive_table 89.1 MB	Not in ASAP	Details
geo bulk	Transcriptional reprogramming in immune cells of HTLV-1 asymptomatic carriers... GSE308157 Homo sapiens	8 samples	archive_table 90 MB	Not in ASAP	Details
geo bulk	LARP6 shapes the mRNA translation of fibrogenic genes [eCLIP] GSE278725 Homo sapiens	8 samples	archive_table 90.6 MB	Not in ASAP	Details
geo bulk	Gut-Brain Axis Regulates Liver Anti-Tumor Immunity GSE253330 Mus musculus	8 samples	archive_table 118 MB	Not in ASAP	Details
geo bulk	Sequential pathogen exposure normalizes the brain neuroimmune microenvironmen... GSE341988 Mus musculus	8 samples	archive_table 120 MB	Not in ASAP	Details
geo bulk	Glioma-intrinsic MAPK/ERK signaling promotes immunotherapy efficacy through T... GSE331374 Homo sapiens	8 samples	archive_table 122 MB	Not in ASAP	Details
geo bulk	Transcriptional and functional profiles of muscarinic cholinergic receptor-ex... GSE296153 Macaca mulatta	8 samples	archive_table 129 MB	Not in ASAP	Details
geo bulk	Dissecting tissue-specific microenvironments in acute myeloid leukemia (Spatial) GSE269043 Mus musculus	8 samples	archive_table 130 MB	Not in ASAP	Details
geo bulk	Conjugation to a transferrin receptor 1-binding Bicycle peptide enhances ASO ... GSE278367 Mus musculus	8 samples	archive_table 134 MB	Not in ASAP	Details
geo bulk	CDC5L in HeLa cell lines GSE242280 Homo sapiens	8 samples	archive_table 145 MB	Not in ASAP	Details
geo bulk	Loss of endothelial ALK1 signaling induces the emergence of a KIT+ angiogenic... GSE297553 Mus musculus	8 samples	archive_table 154 MB	Not in ASAP	Details
geo bulk	m6Am-seq profiling of macrophage-specific Pcif1 knockout mice during experime... GSE334689 Mus musculus	8 samples	archive_table 156 MB	Not in ASAP	Details
geo bulk	Spliceosomal proteins direct RNA methylation to modulate gene expression and ... GSE300776 Schizosaccharomyces pombe	8 samples	archive_table 159 MB	Not in ASAP	Details