External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Drought and salinity stress remodel Asian rice (Oryza sativa) leaf developmen... GSE313726 Oryza sativa	11 samples	archive_table 633 MB	Not in ASAP	Details
geo bulk	Role of HIV-1 in IL-8 response of human stellate cells to gram-positive micro... GSE324653 Homo sapiens	11 samples	archive_table 704 MB	Not in ASAP	Details
geo bulk	Leveraging TNFR2 for antitumour immunity: Treg depletion and myeloid reprogra... GSE330958 Mus musculus	11 samples	archive_table 780 MB	Not in ASAP	Details
geo bulk	Dynamic interaction between tentacle-tethered microdomains in Integrator and ... GSE318299 Homo sapiens	11 samples	archive_table 893 MB	Not in ASAP	Details
geo bulk	Reciprocal Embryo-Endometrial adaptation at Implantation Onset Revealed by 3D... GSE263528 Homo sapiens	11 samples	archive_table 1.1 GB	Not in ASAP	Details
geo bulk	Mithramycin Alters EWS::FLI1 DNA Binding and RNA Polymerase II Processivity t... GSE305545 Homo sapiens	11 samples	archive_table 1.31 GB	Not in ASAP	Details
geo bulk	scCRISPR screens of CD8⁺ T cells in young vs. aged tumors and tdLNs GSE306058 Mus musculus	11 samples	archive_table 1.41 GB	Not in ASAP	Details
geo bulk	Hyaluronic acid networks and emergent tissue mechanics orchestrate mammalian ... GSE274858 Mus musculus	11 samples	archive_table 1.59 GB	Not in ASAP	Details
geo bulk	Chemotherapy-induced reactive myelopoiesis leads to expansion of immunosuppre... GSE314232 Mus musculus	11 samples	archive_table 1.65 GB	Not in ASAP	Details
geo bulk	mitfa-Independent Melanocyte Progenitors are Highly Susceptible to GNAQ-induc... GSE307227 Danio rerio	11 samples	archive_table 1.98 GB	Not in ASAP	Details
geo bulk	Intestinal plasmacytoid dendritic cells preferentially produce interferon lambda GSE304886 Mus musculus	11 samples	archive_table 3.86 GB	Not in ASAP	Details
geo bulk	Gut mycobiota-associated tryptophan catabolites protect against metabolic dys... GSE318635 Mus musculus	12 samples	counts_table 105 Bytes	Not in ASAP	Details
geo bulk	Hawaiian bobtail squid symbiont, Leisingera sp. ANG-M7, uses a “combined arms... GSE316061 Leisingera sp. ANG-M7	12 samples	counts_table 214 Bytes	Not in ASAP	Details
geo bulk	Rectal RNA-seq of mice treated with a multistrain Lactobacillus/Bifidobacteri... GSE319538 Mus musculus	12 samples	counts_table 225 Bytes	Not in ASAP	Details
geo bulk	The two-step purification method ViREn identifies a single NSUN6-mediated 5-m... GSE295911 Homo sapiens	12 samples	counts_table 353 Bytes	Not in ASAP	Details
geo bulk	Epstein-Barr Virus Induced B cell Methionine Dependency is a Targetable Metab... GSE336950 Homo sapiens	12 samples	counts_table 1.58 KB	Not in ASAP	Details
geo bulk	Disease-associated genetic variants can cause missense effects in tissue-spec... GSE303335 Homo sapiens	12 samples	counts_table 2.08 KB	Not in ASAP	Details
geo bulk	Allyl-isothiocyanate affects antimicrobial peptide expression and survival in... GSE318172 Drosophila melanogaster	12 samples	counts_table 11.3 KB	Not in ASAP	Details
geo bulk	CnbHLH130 positively regulates salt tolerance through CnCBL10-CnCIPK4 mediate... GSE307236 Campeiostachys nutans	12 samples	counts_table 12.4 KB	Not in ASAP	Details
geo bulk	Improved RNA preparation for RNA-seq of the intracellular bacterium Wolbachia... GSE297421 Aedes albopictus	12 samples	counts_table 25.9 KB	Not in ASAP	Details
geo bulk	Early seed priming by closely related Bacillus strains drives distinct metabo... GSE299630 Cucumis melo	12 samples	counts_table 34 KB	Not in ASAP	Details
geo bulk	Rewiring of the transcriptome of breast cancer cells in 3D organotypic cultur... GSE303170 Homo sapiens	12 samples	counts_table 36.3 KB	Not in ASAP	Details
geo bulk	Exploring the inhibitory mechanism of DSS-induced ulcerative colitis by Banxi... GSE299286 Mus musculus	12 samples	archive_table 50 KB	Not in ASAP	Details
geo bulk	Transcriptomic and metabolomic profiling of Staphylococcus aureus and Escheri... GSE306179 Escherichia coli; Staphylococcus aureus	12 samples	counts_table 76.3 KB	Not in ASAP	Details
geo bulk	Kluyveromyces marxianus: K. marxianus parental (SLP1) and K. marxianus adapte... GSE176040 Kluyveromyces marxianus	12 samples	counts_table 77.9 KB	Not in ASAP	Details