External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Spatial transcriptomic analysis of tumor heterogeneity in HPV+ and HPV- Head ... GSE268014 Homo sapiens	39 samples	archive_table 15.6 GB	Not in ASAP	Details
geo bulk	Targeting the CHD3 chromatin remodeler exploits a synthetic lethal vulnerabil... GSE323137 Homo sapiens	39 samples	archive_table 19.7 GB	Not in ASAP	Details
geo bulk	Genome reorganization and its functional impact during breast cancer progression GSE320319 Homo sapiens	39 samples	archive_table 37.6 GB	Not in ASAP	Details
geo bulk	Gene expression analysis and proximity labeling reveal posttranscriptional fu... GSE290861 Saccharomyces cerevisiae	40 samples	counts_table 67 KB	Not in ASAP	Details
geo bulk	Human ribomes reveal DNA-embedded ribonucleotides as epigenetic modulators of... GSE297046 Homo sapiens	40 samples	counts_table 335 KB	Not in ASAP	Details
geo bulk	Comparison of global mRNA decay at single-gene resolution in E. coli Δrnb Δrn... GSE315070 Escherichia coli	40 samples	counts_table 405 KB	Not in ASAP	Details
geo bulk	Organoid modeling of lung branching morphogenesis and epithelial lineage spec... GSE300722 Mus musculus	40 samples	counts_table 468 KB	Not in ASAP	Details
geo bulk	Early-life RNA sequencing of colon stromal cells and iNKT cells GSE297816 Mus musculus	40 samples	counts_table 490 KB	Not in ASAP	Details
geo bulk	Derivation of elephant induced pluripotent stem cells [short-read RNA-seq] GSE300277 Elephas maximus	40 samples	counts_table 506 KB	Not in ASAP	Details
geo bulk	CDK4/6 inhibition induces a senescence-associated secretory phenotype via del... GSE295260 Homo sapiens	40 samples	counts_table 535 KB	Not in ASAP	Details
geo bulk	Evaluating the cis-regulatory potential of full-length LINE-1 elements GSE212329 Mus musculus	40 samples	counts_table 545 KB	Not in ASAP	Details
geo bulk	Targeting Nat10 reprograms regulatory T cells function to enhance anti-PD-1 i... GSE254341 Homo sapiens; Mus musculus	40 samples	counts_table 607 KB	Not in ASAP	Details
geo bulk	Functional redundancy between UTY and UTX in regulating the localization of t... GSE301297 Homo sapiens	40 samples	counts_table 755 KB	Not in ASAP	Details
geo bulk	Suppression of Notch during efferocytosis prevents macrophages inflammatory p... GSE283547 Mus musculus	40 samples	counts_table 808 KB	Not in ASAP	Details
geo bulk	Circulating Transfer RNA Related Fragment (tRF) Abundance After Experimental ... GSE327533 Papio anubis	40 samples	counts_table 848 KB	Not in ASAP	Details
geo bulk	Insulin Signaling Functions as a Topological Switch That Couples Aging and He... GSE338796 Drosophila melanogaster	40 samples	counts_table 869 KB	Not in ASAP	Details
geo bulk	Cx43-mediated mitochondrial transfer from MSCs mitigate oxidative stress-infl... GSE266396 Mus musculus	40 samples	counts_table 895 KB	Not in ASAP	Details
geo bulk	IGF2BP3 regulates RNA metabolism during unfolded protein response [RKO iCas9 ... GSE289480 Homo sapiens	40 samples	counts_table 1020 KB	Not in ASAP	Details
geo bulk	Exposure of male mice to nicotine leads to metabolic dysfunction in their mal... GSE313674 Mus musculus	40 samples	counts_table 1.03 MB	Not in ASAP	Details
geo bulk	Determination of transcriptomic changes associated with freezing-temperature ... GSE297489 Arabidopsis thaliana	40 samples	counts_table 1.06 MB	Not in ASAP	Details
geo bulk	Candidate master microRNA regulator of arsenic-induced pancreatic beta cell i... GSE199458 Rattus norvegicus	40 samples	counts_table 1.27 MB	Not in ASAP	Details
geo bulk	QKI dysregulation induces extensive splicing changes in T-Cell Acute Lymphobl... GSE281561 Homo sapiens	40 samples	counts_table 1.3 MB	Not in ASAP	Details
geo bulk	A transfer RNA modification drives genome-wide synonymous recoding across hum... GSE304916 Homo sapiens; Streptococcus mutans	40 samples	archive_table 1.33 MB	Not in ASAP	Details
geo bulk	Differential gene expression analysis with or without IL-6 in multiple myelom... GSE298693 Homo sapiens	40 samples	counts_table 1.41 MB	Not in ASAP	Details
geo bulk	A transport-independent role for SLC25A12 in mitochondrial stress signaling GSE317248 Homo sapiens	40 samples	counts_table 1.43 MB	Not in ASAP	Details