External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Transcriptome analysis of pancreatic progenitor organoids (POs) carrying PDA... GSE272460 Homo sapiens	40 samples	archive_table 100 MB	Not in ASAP	Details
geo bulk	Engineered probiotics limit T-cell driven CNS autoimmunity by activating AHR-... GSE296433 Mus musculus	40 samples	archive_table 109 MB	Not in ASAP	Details
geo bulk	Increased competition for eIF4 factors or 40S ribosomal subunits disfavors tr... GSE309137 Saccharomyces cerevisiae BY4741; Saccharomyces cerevisiae	40 samples	archive_table 131 MB	Not in ASAP	Details
geo bulk	Spatially resolved m6A profiling using m6A-ARTR-DBiT GSE285303 Homo sapiens; Mus musculus	40 samples	archive_table 711 MB	Not in ASAP	Details
geo bulk	Ageing promotes metastasis via activation of the integrated stress response GSE263689 Mus musculus	40 samples	archive_table 951 MB	Not in ASAP	Details
geo bulk	Perk is dispensable for smooth muscle cell phenotype switching in atheroscler... GSE319971 Mus musculus	40 samples	archive_table 968 MB	Not in ASAP	Details
geo bulk	Accelerated RNA polymerase II elongation drives endothelial transition and pl... GSE330230 Mus musculus; Homo sapiens	40 samples	archive_table 1.9 GB	Not in ASAP	Details
geo bulk	Identification of target genes and regulatory networks for bone mineral densi... GSE319326 Homo sapiens	40 samples	archive_table 2.07 GB	Not in ASAP	Details
geo bulk	The 3D genomics of lampbrush chromosomes highlights the role of active transc... GSE288415 Gallus gallus	40 samples	archive_table 2.2 GB	Not in ASAP	Details
geo bulk	T-bet and Runx3 orchestrate effector CD8 T cell differentiation and lineage f... GSE342312 Mus musculus	40 samples	archive_table 3.2 GB	Not in ASAP	Details
geo bulk	BHLHE40 Orchestrates TL1A-Driven ILC3 Effector Programs and RORγt⁺ APC-Mediat... GSE325199 Mus musculus	40 samples	archive_table 3.59 GB	Not in ASAP	Details
geo bulk	3D Chromatin organization of signal-induced specific enhancers safeguards ear... GSE278416 Mus musculus	40 samples	archive_table 4.4 GB	Not in ASAP	Details
geo bulk	TGFβ signaling promotes cell cycle progression and resistance to the CDK4/6 i... GSE300358 Homo sapiens	40 samples	archive_table 4.83 GB	Not in ASAP	Details
geo bulk	Leukemia aggressiveness is driven by chromatin remodeling and expression chan... GSE313096 Mus musculus	40 samples	archive_table 4.91 GB	Not in ASAP	Details
geo bulk	Multi-omic profiling unveils molecular landscapes and heterogeneous tumor mic... GSE278149 Homo sapiens	40 samples	archive_table 14.1 GB	Not in ASAP	Details
geo bulk	Molecular Drivers of Neuroinflammation in Amyotrophic Lateral Sclerosis GSE268995 Homo sapiens	40 samples	archive_table 35.9 GB	Not in ASAP	Details
geo bulk	Step-wise signal integration governs adaptive programming of lymphocytes [bul... GSE292377 Mus musculus	41 samples	counts_table 147 KB	Not in ASAP	Details
geo bulk	Multi omics reveals mesodermal fate bias and enables predictive cell state co... GSE331399 Homo sapiens	41 samples	counts_table 500 KB	Not in ASAP	Details
geo bulk	Reciprocal genetic screens identify epigenetics factors controlling epidermal... GSE276628 Mus musculus	41 samples	counts_table 888 KB	Not in ASAP	Details
geo bulk	Paired transcriptomics reveals similarities between cytokine-stimulated organ... GSE288617 Homo sapiens	41 samples	counts_table 1.05 MB	Not in ASAP	Details
geo bulk	Transcriptome sequencing of Hodgkin lymphoma Hodgkin and Reed-Sternberg cells... GSE301492 Homo sapiens	41 samples	counts_table 1.39 MB	Not in ASAP	Details
geo bulk	Interleukin-33 activated group 2 innate lymphoid cells drive type 2 immune dy... GSE339493 Mus musculus	41 samples	counts_table 1.5 MB	Not in ASAP	Details
geo bulk	Impact of Reduced Maternal Tryptophan on the Placenta-Brain Axis GSE330442 Mus musculus	41 samples	counts_table 2.19 MB	Not in ASAP	Details
geo bulk	Trabectedin and low-dose irinotecan to target EWS::FLI1 in Ewing sarcoma: a p... GSE322664 Homo sapiens	41 samples	counts_table 2.33 MB	Not in ASAP	Details
geo bulk	Impact of Mek1 and Mek2 deletion on the transcriptome of spleen B cell subpop... GSE287527 Mus musculus	41 samples	counts_table 2.43 MB	Not in ASAP	Details