External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Simplified Molecular Classification of Urothelial Carcinoma via Multi-Omic Pr... GSE308936 Homo sapiens	45 samples	counts_table 1.62 MB	Not in ASAP	Details
geo bulk	Comparison of mRNA populations between mutants with and without active HIF-1,... GSE330000 Caenorhabditis elegans	45 samples	counts_table 1.79 MB	Not in ASAP	Details
geo bulk	Gene Expression Analysis of CD4 T Cells in Autoimmune Pancreatitis: Treatment... GSE282913 Homo sapiens	45 samples	counts_table 1.8 MB	Not in ASAP	Details
geo bulk	JAX Study 13- RNA-seq of male KOLF2.2J hiPSC-derived endoderm and mesoderm ho... GSE327332 Homo sapiens	45 samples	counts_table 1.89 MB	Not in ASAP	Details
geo bulk	Complex I Drives Glutamine-Dependent TCA Cycle to Support Viability of MYChig... GSE331349 Homo sapiens	45 samples	counts_table 2.14 MB	Not in ASAP	Details
geo bulk	High-frequency recurrence index for predicting multiple recurrences in non-mu... GSE294703 Homo sapiens	45 samples	counts_table 2.59 MB	Not in ASAP	Details
geo bulk	Tape strips capture immune and epidermal hyperplasia markers in the major orp... GSE305032 Homo sapiens	45 samples	counts_table 3 MB	Not in ASAP	Details
geo bulk	Forced Notch2 signaling instructs TLR and BCR responsiveness in B cells [RNA-... GSE335245 Mus musculus	45 samples	counts_table 5.99 MB	Not in ASAP	Details
geo bulk	Inducible XIST-mediated trisomy 21 correction uncovers a USP16-p16 senescence... GSE322851 Homo sapiens	45 samples	counts_table 6.7 MB	Not in ASAP	Details
geo bulk	Transcriptomic characterization of Wild type mouse Embryonic Stem Cells (mES... GSE327304 Mus musculus	45 samples	archive_table 7.54 MB	Not in ASAP	Details
geo bulk	In perennial Arabis alpina CONSTANS and FLOWERING LOCUS T have common and dis... GSE317358 Arabis alpina	45 samples	counts_table 8.94 MB	Not in ASAP	Details
geo bulk	SEC13 functions in the NMD pathway and together with core NMD factors regulat... GSE329468 Homo sapiens	45 samples	counts_table 11.4 MB	Not in ASAP	Details
geo bulk	Homeostatic inflammation in the placenta is protective against adult cardiova... GSE202816 Homo sapiens	45 samples	archive_table 16.4 MB	Not in ASAP	Details
geo bulk	Seasonal changes in the transcriptome of bat eyes reveal adaptive changes to ... GSE326215 Tadarida brasiliensis	45 samples	archive_table 19.9 MB	Not in ASAP	Details
geo bulk	Long read RNA sequencing reveals a new long non-coding RNA that regulates som... GSE282319 Mus musculus	45 samples	counts_table 20.9 MB	Not in ASAP	Details
geo bulk	Stag2 dependent chromatin remodeling enforces the erythroid-specific Gata1 ci... GSE301108 Mus musculus	45 samples	counts_table 527 MB	Not in ASAP	Details
geo bulk	TORC1-driven translation of Nucleoporin44A promotes chromatin remodeling and ... GSE292611 Drosophila melanogaster	45 samples	archive_table 544 MB	Not in ASAP	Details
geo bulk	Bulk TCR-sequencing of various tissues in mice treated with 2% DSS or H2O con... GSE233491 Mus musculus	45 samples	archive_table 775 MB	Not in ASAP	Details
geo bulk	Human HN-SCC-151 HPV-negative head and neck squamous cell carcinoma cells tre... GSE333740 Mus musculus; Homo sapiens	45 samples	archive_table 1.81 GB	Not in ASAP	Details
geo bulk	An IRF3-POLR2G axis represses liver FGF21 and metabolic transcriptional programs GSE331036 Mus musculus	45 samples	archive_table 2.12 GB	Not in ASAP	Details
geo bulk	Evolutionary diversity of cell-type-specific expression and stress response i... GSE268881 Arabidopsis thaliana; Eutrema salsugineum; Camelina sativa; Schrenkiella parvula; Sisymbrium irio	45 samples	archive_table 2.33 GB	Not in ASAP	Details
geo bulk	Extracellular matrix reprogramming by the YAP/TAZ/TGF-ß2 axis drives immune e... GSE301501 Mus musculus	45 samples	archive_table 5.02 GB	Not in ASAP	Details
geo bulk	Organ injury in systemic autoimmunity is mediated by stem-like CD8 T cells ar... GSE318514 Mus musculus	45 samples	archive_table 9.88 GB	Not in ASAP	Details
geo bulk	Granzyme K CD8⁺ T cells with tissue-resident features promote intestinal infl... GSE289496 Homo sapiens	45 samples	archive_table 25.4 GB	Not in ASAP	Details
geo bulk	Histone modification clocks for robust cross-species biological age predictio... GSE296812 Homo sapiens; Drosophila melanogaster	46 samples	counts_table 286 KB	Not in ASAP	Details