External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Adaptive immunity shapes baseline pImmunity Shapes Baseline Physiology of M. ... GSE324037 Mus musculus; Mycobacterium tuberculosis str. Erdman = ATCC 35801	49 samples	archive_table 7.34 MB	Not in ASAP	Details
geo bulk	A high MAPK, low WNT cell state drives metastatic dissemination in colorectal... GSE283937 Mus musculus	49 samples	archive_table 88.8 MB	Not in ASAP	Details
geo bulk	Proximity of pre-mRNA 3′ end processing and transcription termination is asso... GSE291826 Homo sapiens	49 samples	archive_table 3.15 GB	Not in ASAP	Details
geo bulk	Two MADS-box transcription factors mediate epigenetic control of tomato fruit... GSE210590 Solanum lycopersicum	49 samples	archive_table 8.3 GB	Not in ASAP	Details
geo bulk	RNAseq of Cladosporium europaeum in presence of PCB congeners GSE330673 Cladosporium europaeum	50 samples	archive_table 90 KB	Not in ASAP	Details
geo bulk	Divergent medulloblastoma chromatin states disclose KDM2B as a selective depe... GSE269909 Homo sapiens	50 samples	counts_table 1.38 MB	Not in ASAP	Details
geo bulk	Endometrial cortisol level and its relationship with psychological stress, mo... GSE310309 Homo sapiens	50 samples	counts_table 1.39 MB	Not in ASAP	Details
geo bulk	Acute high-dose irradiation disrupts cell adhesion and Silk-Ovarioid formatio... GSE291604 Homo sapiens	50 samples	counts_table 1.83 MB	Not in ASAP	Details
geo bulk	The Polycomb Protein EED Constrains the SCLC Neuroendocrine Phenotype and Dri... GSE293599 Mus musculus	50 samples	counts_table 2.08 MB	Not in ASAP	Details
geo bulk	H3K9 di-methylation dynamics underlies mouse minor zygotic genome activation ... GSE296993 Mus musculus	50 samples	counts_table 2.53 MB	Not in ASAP	Details
geo bulk	Microbiota-Derived Isovalerate Ameliorates Sex-Specific Gut Barrier Dysfuncti... GSE316703 Mus musculus	50 samples	counts_table 2.64 MB	Not in ASAP	Details
geo bulk	Transcriptomic profiling of zebrafish mutants for orthologs of genes that inc... GSE314974 Danio rerio	50 samples	archive_table 6.55 MB	Not in ASAP	Details
geo bulk	An orally active, gut-enriched AhR agonist demonstrates therapeutic efficacy ... GSE338894 Mus musculus	50 samples	counts_table 10.4 MB	Not in ASAP	Details
geo bulk	De novo transcriptome assembly of the Korean minipig (Sus scrofa) [I] GSE326758 Sus scrofa	50 samples	counts_table 11.2 MB	Not in ASAP	Details
geo bulk	De novo transcriptome assembly of the Korean minipig (Sus scrofa) [II] GSE326773 Sus scrofa	50 samples	counts_table 11.4 MB	Not in ASAP	Details
geo bulk	Systematic Identification of Germ Granule Proteins Reveals Specialized Roles ... GSE317407 Caenorhabditis elegans	50 samples	archive_table 79.2 MB	Not in ASAP	Details
geo bulk	H3 dopaminylation and CaMKII modulate diffuse midline glioma response to CDK9... GSE324146 Homo sapiens	50 samples	archive_table 3.61 GB	Not in ASAP	Details
geo bulk	Distinct histone 3 lysine methylation states underlie tumor immune surveillance GSE341379 Mus musculus	50 samples	archive_table 15.5 GB	Not in ASAP	Details
geo bulk	Chronic ER Stress Induced of Cell-surface Chaperones as the Therapeutic Targe... GSE291245 Homo sapiens	51 samples	counts_table 479 KB	Not in ASAP	Details
geo bulk	Association between blood parameters, whole-blood transcriptomic profiles, an... GSE319496 Homo sapiens	51 samples	counts_table 742 KB	Not in ASAP	Details
geo bulk	Characterize the effects of L. asaccharolyticus on autistic-like symptoms GSE324679 Homo sapiens; Mus musculus	51 samples	counts_table 952 KB	Not in ASAP	Details
geo bulk	A pan-cancer immune and genomic feature-based classification of tumor microen... GSE292421 Homo sapiens	51 samples	counts_table 956 KB	Not in ASAP	Details
geo bulk	In vitro arrayed OVOL2 overexpression in PDA Cell Lines (bulk RNA-Seq) GSE280160 Homo sapiens	51 samples	counts_table 1.25 MB	Not in ASAP	Details
geo bulk	Transcriptional plasticity of stromal cells amplifies their differentiation e... GSE288316 Homo sapiens	51 samples	counts_table 1.33 MB	Not in ASAP	Details
geo bulk	Hierarchical, non-additive MARTX effector interplay rewires host transcriptio... GSE327326 Homo sapiens	51 samples	counts_table 1.47 MB	Not in ASAP	Details