External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Gene expression profiling of catfish after treatment with copper sulfate and ... GSE136222 Ictalurus punctatus	54 samples	archive_table 7.79 MB	Not in ASAP	Details
geo bulk	Plant hormone and peptide signaling converge in the genetic network regulatin... GSE293194 Arabidopsis thaliana	54 samples	archive_table 8.19 MB	Not in ASAP	Details
geo bulk	Gut Microbiota Dysbiosis Remodels the Multi-Tissue Transcriptional Landscape ... GSE322803 Mus musculus	54 samples	counts_table 8.5 MB	Not in ASAP	Details
geo bulk	Histone chaperon ASF1B recruits distinct epigenetic factors in regulation of ... GSE215076 Mus musculus	54 samples	archive_table 10.5 MB	Not in ASAP	Details
geo bulk	Spatially organizing million callus cells identify the core-network enable to... GSE292970 Homo sapiens	54 samples	counts_table 11.2 MB	Not in ASAP	Details
geo bulk	Post-transcriptional regulation of proliferation and quiescence GSE178652 Homo sapiens	54 samples	archive_table 18 MB	Not in ASAP	Details
geo bulk	Evolutionarily divergent transcriptomic programs in ovarian folliculogenesis ... GSE290088 Mus musculus	54 samples	archive_table 21.3 MB	Not in ASAP	Details
geo bulk	IRF2 degradation tunes the innate immune response [RNA-Seq] GSE317907 Mus musculus	54 samples	archive_table 26.1 MB	Not in ASAP	Details
geo bulk	RNA Polymerase III inhinition leads to changes in protein coding gene expression GSE333557 Homo sapiens	54 samples	counts_table 46.1 MB	Not in ASAP	Details
geo bulk	Cooperativity between H3-K27M and PDGFRA poses multiple therapeutic vulnerabi... GSE225491 Homo sapiens	54 samples	archive_table 151 MB	Not in ASAP	Details
geo bulk	Effect of GBA1 deficiency in human iPSC-derived dopaminergic neurons and astr... GSE315738 Homo sapiens	54 samples	archive_table 235 MB	Not in ASAP	Details
geo bulk	Effect of Gnmt overexpression on rhythmic gene expression in Drosophila melan... GSE267056 Drosophila melanogaster	54 samples	archive_table 701 MB	Not in ASAP	Details
geo bulk	Antibody Mediated Diversification of Primary and Secondary Humoral Immune Res... GSE326797 Mus musculus	54 samples	archive_table 1.12 GB	Not in ASAP	Details
geo bulk	Umbilical Cord Blood Cell Transcriptional and Methylation Signatures at Birth... GSE302180 Homo sapiens	54 samples	archive_table 1.43 GB	Not in ASAP	Details
geo bulk	Reprogramming-driven drug discovery uncovers sildenafil as a candidate drug f... GSE292178 Homo sapiens	54 samples	archive_table 2.04 GB	Not in ASAP	Details
geo bulk	TGF-β signaling promotes astroglial activation and TDP-43 proteinopathy in or... GSE282668 Homo sapiens	54 samples	archive_table 5.07 GB	Not in ASAP	Details
geo bulk	ChAHP Silences SINE Retrotransposons by Inhibiting TFIIIB Recruitment [RNA-seq] GSE297833 Mus musculus	54 samples	archive_table 9.88 GB	Not in ASAP	Details
geo bulk	Giant viruses encode vitamin K–based redox modules for lipid modification GSE341297 synthetic construct; Vermamoeba vermiformis	55 samples	counts_table 1.66 MB	Not in ASAP	Details
geo bulk	Sensitive CAR T cells redefine targetable CD70 expression in solid tumors [RN... GSE306609 Homo sapiens	55 samples	counts_table 2.27 MB	Not in ASAP	Details
geo bulk	Radiation triggers a clinically relevant profibrotic p53-mediated DNA damage ... GSE297035 Homo sapiens	55 samples	counts_table 2.76 MB	Not in ASAP	Details
geo bulk	Divergent clonal evolution and tumor microenvironment remodeling shape gastri... GSE314812 Homo sapiens	55 samples	counts_table 3.53 MB	Not in ASAP	Details
geo bulk	SARS-CoV-2 Variant Boosters and Breakthrough Infections Drive Functional Diff... GSE303324 Homo sapiens	55 samples	archive_table 14.4 MB	Not in ASAP	Details
geo bulk	KLF4 promotes a KRT13+ hillock-like state in squamous lung cancer GSE291730 Homo sapiens; Mus musculus	55 samples	archive_table 418 MB	Not in ASAP	Details
geo bulk	LsrL modulates Lsr2-induced chromatin structure to tune biosynthetic gene clu... GSE310427 Streptomyces venezuelae	55 samples	archive_table 529 MB	Not in ASAP	Details
geo bulk	X-Linked Cancer-Associated Polypeptide, Encoded by a Putative Noncoding RNA, ... GSE288983 Homo sapiens	55 samples	archive_table 2.26 GB	Not in ASAP	Details