External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Prolonged duration induces divergent transcriptomic responses to manganese, d... GSE327797 Homo sapiens	60 samples	counts_table 4.97 MB	Not in ASAP	Details
geo bulk	Gene expression profile of Radiatiom resistant BRAFV400E type pediatric low-g... GSE268207 Homo sapiens	60 samples	archive_table 6.63 MB	Not in ASAP	Details
geo bulk	Transcriptional regulation of durum wheat response to abiotic stress GSE318338 Triticum turgidum subsp. durum	60 samples	counts_table 7.44 MB	Not in ASAP	Details
geo bulk	Dynamic immune regulation of Gymnocypris eckloni in response to severe short-... GSE330698 Gymnocypris eckloni	60 samples	counts_table 8.45 MB	Not in ASAP	Details
geo bulk	Inhibition of Salt-Inducible Kinases 2 and 3 reduces inflammatory signature i... GSE331382 Homo sapiens	60 samples	counts_table 10.5 MB	Not in ASAP	Details
geo bulk	GmJAG1 regulates leaf shape development in soybean through transcriptional co... GSE317596 Glycine max	60 samples	counts_table 13.5 MB	Not in ASAP	Details
geo bulk	RNA-sequencing from nasal curettes or swabs collected from young children age... GSE290387 Homo sapiens	60 samples	archive_table 13.9 MB	Not in ASAP	Details
ebi_sc sc	Transcriptomic profiling of antigen-specific T cells at the single-cell level... Publication DOI E-MTAB-4850 Homo sapiens	60 cells	h5ad 14 MB	Not in ASAP	Details
geo bulk	Viral entry defines the hepatitis E virus species barrier in murine hepatocytes GSE319021 Mus musculus; Homo sapiens	60 samples	archive_table 218 MB	Not in ASAP	Details
geo bulk	Degron models: a toolbox for rapid in vivo depletion of essential proteins re... GSE309776 Mus musculus	60 samples	archive_table 1010 MB	Not in ASAP	Details
geo bulk	CD4/CD8 ratio is associated with structural reorganization of vaccine-induced... GSE332711 Homo sapiens	60 samples	archive_table 1.5 GB	Not in ASAP	Details
geo bulk	Neurodevelopmental disorder genes GSE327685 Homo sapiens	60 samples	archive_table 4.86 GB	Not in ASAP	Details
geo bulk	Allosteric effectors of PRC2 synergise to restrict Polycomb domains spread GSE278724 Mus musculus	60 samples	archive_table 7.32 GB	Not in ASAP	Details
geo bulk	TET3-mediated DNA demethylation contributes to the formation of stable epiall... GSE303457 Solanum lycopersicum	60 samples	archive_table 7.98 GB	Not in ASAP	Details
geo bulk	Stag2-mediated chromatin dynamics regulates antibody class switch recombination GSE312233 Mus musculus	60 samples	archive_table 8.04 GB	Not in ASAP	Details
geo bulk	Distinct differentiation trajectories leave lasting impacts on gene regulatio... GSE283005 Homo sapiens	60 samples	archive_table 8.07 GB	Not in ASAP	Details
geo bulk	HNF4a controls growth, identity and response to KRAS inhibition in IMA. GSE294573 Mus musculus; Homo sapiens	60 samples	archive_table 9.03 GB	Not in ASAP	Details
geo bulk	Exploiting Androgen Receptor Cell Cycle Effects to Enhance CDK4/6 Inhibitor E... GSE300130 Homo sapiens	61 samples	counts_table 1.37 MB	Not in ASAP	Details
geo bulk	Wnt signaling restores evolutionary loss of robust foot regeneration rates i... GSE295690 Hydra oligactis	61 samples	counts_table 1.57 MB	Not in ASAP	Details
geo bulk	Identifying expression and DNA methylation biomarkers for lung adenocarcinoma... GSE314660 Homo sapiens	61 samples	counts_table 1.78 MB	Not in ASAP	Details
geo bulk	Inhibition of oogenic JNK prevents primary ovarian insufficiency and infertil... GSE314244 Mus musculus	61 samples	counts_table 1.82 MB	Not in ASAP	Details
geo bulk	The genetic landscape of a human cell reveals conserved topology and principl... GSE296341 Homo sapiens	61 samples	counts_table 2.85 MB	Not in ASAP	Details
geo bulk	Effects of HDAC gene knockdowns in human stem cell derived cardiomyocytes GSE309350 Homo sapiens	61 samples	counts_table 5.17 MB	Not in ASAP	Details
geo bulk	Hypoxia shapes both therapeutic response and resistance in metastatic clear c... GSE293952 Homo sapiens	61 samples	counts_table 10.3 MB	Not in ASAP	Details
geo bulk	Genome folding and nuclear speckles converge to orchestrate fibroblast activa... GSE305412 Homo sapiens	61 samples	archive_table 148 MB	Not in ASAP	Details