External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Aberrant mRNA Splicing and Impaired Hippocampal Neurogenesis in Grin2b Mutant... GSE312325 Mus musculus	63 samples	archive_table 120 MB	Not in ASAP	Details
geo bulk	p53 safeguards chemical reprogramming of human somatic cells towards pluripot... GSE287613 Homo sapiens	63 samples	archive_table 596 MB	Not in ASAP	Details
geo bulk	mRNA stability in response to m6A placement is linked to cell identity in pla... GSE325813 Schmidtea mediterranea	63 samples	archive_table 4.94 GB	Not in ASAP	Details
geo bulk	Transposable Element-Driven Expansion of Enhancer RNA Repertoires Underlies R... GSE296825 Hordeum vulgare; Triticum aestivum; Triticum urartu; Oryza sativa; Secale cereale; Aegilops tauschii; Zea mays	63 samples	archive_table 6.18 GB	Not in ASAP	Details
geo bulk	Cohesin cofactor dosage sets the rate of loop extrusion, rendering genome fol... GSE279297 Mus musculus	63 samples	archive_table 12 GB	Not in ASAP	Details
geo bulk	MED26 facilitates Mediator–Pol II complex assembly and promotes nuclear stres... GSE318822 Homo sapiens	63 samples	archive_table 14 GB	Not in ASAP	Details
geo bulk	Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immu... GSE302760 Mus musculus	63 samples	archive_table 52.4 GB	Not in ASAP	Details
geo bulk	Functional characterization of androgen receptor dimerization interfaces [RNA... GSE333539 Homo sapiens	64 samples	counts_table 575 KB	Not in ASAP	Details
geo bulk	H2A.Z levels control the timing of major events at the maternal-zygotic trans... GSE327664 Drosophila melanogaster; Danio rerio	64 samples	counts_table 769 KB	Not in ASAP	Details
geo bulk	A novel potent and selective GCN2 inhibitor, APL-4098, has anti-leukemic acti... GSE319868 Homo sapiens	64 samples	counts_table 1.17 MB	Not in ASAP	Details
geo bulk	Diurnal regulation of Acyl-CoA synthetase 3 (ACSF3) governs rhythmic mitochon... GSE330452 Mus musculus	64 samples	counts_table 1.48 MB	Not in ASAP	Details
geo bulk	RNA-seq of liver biopsies from patients with pediatric autoimmune liver disease GSE303271 Homo sapiens	64 samples	counts_table 2.88 MB	Not in ASAP	Details
geo bulk	RNA-Seq of CD3+ T cells flow sorted from MLR assays with TNF/TNFR inhibitory ... GSE339038 Homo sapiens	64 samples	counts_table 3.42 MB	Not in ASAP	Details
geo bulk	Analysis of Host and Microbiome Responses to Antibiotics Reveals Microbiota-I... GSE293029 Mus musculus	64 samples	counts_table 5.73 MB	Not in ASAP	Details
geo bulk	Lysosomal Stress and Mitochondrial Dysfunction Define the Cellular Response t... GSE305949 Homo sapiens	64 samples	counts_table 5.87 MB	Not in ASAP	Details
geo bulk	Time-resolved transcriptomic responses of kidney distal convoluted tubules in... GSE269409 Mus musculus	64 samples	counts_table 6.4 MB	Not in ASAP	Details
geo bulk	Sequencing of total RNA from human naevi and adjacent normal skin GSE300278 Homo sapiens	64 samples	counts_table 8.4 MB	Not in ASAP	Details
geo bulk	IKAROS re-expression modulates transcriptional networks in IKZF1-mutant Ph+ B... GSE310976 Homo sapiens	64 samples	archive_table 17 MB	Not in ASAP	Details
geo bulk	Parkinson's disease (PD) genetic asymmetry in SNCA PFF injected mouse model GSE266555 Mus musculus	64 samples	archive_table 19.7 MB	Not in ASAP	Details
geo bulk	PALINCODE: Recording cell lineage with ternary palindromic CRISPR bits GSE327634 Homo sapiens	64 samples	archive_table 84.5 MB	Not in ASAP	Details
geo bulk	Contribution of cytotoxic CD8 T cells, neutrophils and type 1 interferon sign... GSE324044 Homo sapiens	64 samples	archive_table 89.8 MB	Not in ASAP	Details
geo bulk	Functional characterization of Central Nervous System (CNS) and peripheral im... GSE280720 Homo sapiens	64 samples	archive_table 1.82 GB	Not in ASAP	Details
geo bulk	Reciprocal, methylation-dependent binding of Zfp57 and Gzf1 safeguards Dlk1-D... GSE337304 Mus musculus	64 samples	archive_table 2.32 GB	Not in ASAP	Details
geo bulk	Vascular smooth muscle cell state trajectories mediate molecular mechanisms o... GSE333685 Homo sapiens; Mus musculus	64 samples	archive_table 4.84 GB	Not in ASAP	Details
geo bulk	Combination of a CCL21-gene modified dendritic cell vaccine and pembrolizumab... GSE317309 Homo sapiens; Mus musculus	64 samples	archive_table 7.59 GB	Not in ASAP	Details