External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	METIMMOX: Colorectal Cancer METastasis - Shaping Anti-tumor IMMunity by OXali... GSE313035 Homo sapiens	67 samples	counts_table 2.6 MB	Not in ASAP	Details
geo bulk	Coronavirus protein interaction mapping in bat and human cells identifies mol... GSE302357 Homo sapiens; Rhinolophus ferrumequinum	67 samples	counts_table 4.09 MB	Not in ASAP	Details
geo bulk	The degradation of maternal RNA-binding protein 4E-T regulates translational ... GSE314859 Mus musculus	67 samples	counts_table 4.89 MB	Not in ASAP	Details
ebi_sc sc	Reactive oligodendrocyte progenitor cells (re-)myelinate the regenerating zeb... Publication DOI E-GEOD-161642 Danio rerio	67 cells	h5ad 12 MB	Not in ASAP	Details
geo bulk	In vivo double knockout CAR-T screen identifies synergistic gene pairs that e... GSE272887 Homo sapiens; synthetic construct	67 samples	archive_table 90.9 MB	Not in ASAP	Details
geo bulk	The H3K4 methyltransferase KMT2D is an essential cofactor for GATA1 at erythr... GSE293567 Homo sapiens	67 samples	archive_table 5.95 GB	Not in ASAP	Details
geo bulk	DNMT3B plays antagonistic roles with SMARCB1 and is a targetable vulnerabilit... GSE336720 Homo sapiens	68 samples	counts_table 663 KB	Not in ASAP	Details
geo bulk	RNA sequencing of Metastatic urothelial carcinoma (UC) GSE301508 Homo sapiens	68 samples	counts_table 1.9 MB	Not in ASAP	Details
geo bulk	Transcriptomic Profiling of CD66b+ Neutrophils from Healthy Controls and Card... GSE302306 Homo sapiens	68 samples	counts_table 1.95 MB	Not in ASAP	Details
geo bulk	Sex-specific KDM6A-HNF4A-CREBH network controls lipoprotein cholesterol metab... GSE287688 Mus musculus; Homo sapiens	68 samples	counts_table 3.75 MB	Not in ASAP	Details
geo bulk	Transcriptomic Profiling of Patients’ Human Brown and White Adipose Tissue De... GSE334145 Homo sapiens	68 samples	counts_table 4.87 MB	Not in ASAP	Details
geo bulk	CDK8 inhibition sequesters Med1 at EWS-FLI enhancers [RNA-Seq] GSE304126 Homo sapiens	68 samples	archive_table 10.1 MB	Not in ASAP	Details
geo bulk	Targeting ATR signaling in sarcoma with homologous recombination deficiency GSE299349 Homo sapiens	68 samples	archive_table 171 MB	Not in ASAP	Details
geo bulk	Dynamic Resilience: Stress Phenotypes and Their Impact on Opioid-Taking Behav... GSE310244 Mus musculus	68 samples	archive_table 208 MB	Not in ASAP	Details
geo bulk	B cell imprinting in children impairs antibodies to the hemagglutinin stalk GSE297740 Homo sapiens	68 samples	archive_table 1.34 GB	Not in ASAP	Details
geo bulk	A functional overlap between actively transcribed genes and insulator elements GSE313947 Mus musculus	68 samples	archive_table 4.69 GB	Not in ASAP	Details
geo bulk	Ubiquitin-like proteins NEDD8 and SUMO2 control epithelial homeostasis, regen... GSE326753 Homo sapiens; Mus musculus	68 samples	archive_table 37.3 GB	Not in ASAP	Details
geo bulk	Asymmetry and redundancy of STAT5 paralogs across CD8+ T cell differentiation... GSE319829 Mus musculus	69 samples	counts_table 493 KB	Not in ASAP	Details
geo bulk	Host Adaptation at the Cost of Biofilm Formation Drives Outbreak Persistence ... GSE312575 Lodderomyces parapsilosis	69 samples	counts_table 745 KB	Not in ASAP	Details
geo bulk	Immunological responses and clinical outcomes in dogs with osteosarcoma recei... GSE318201 Canis lupus familiaris	69 samples	counts_table 2.7 MB	Not in ASAP	Details
geo bulk	Molecular phenotyping and promoter-specific regulation of gene expression in ... GSE343072 Homo sapiens	69 samples	counts_table 3.09 MB	Not in ASAP	Details
geo bulk	TF overexpression assay in PDA cell lines (Bulk RNA-Seq) GSE161368 Homo sapiens	69 samples	counts_table 3.1 MB	Not in ASAP	Details
geo bulk	Mosaic gastruloids reveal a temporal restriction for developmental cell compe... GSE294530 Mus musculus	69 samples	counts_table 3.12 MB	Not in ASAP	Details
geo bulk	Cortical bulk RNA sequencing of APOE-TR mice under calorie restriction and no... GSE286644 Mus musculus	69 samples	counts_table 3.6 MB	Not in ASAP	Details
geo bulk	Translatome profiling reveals opposing alterations in inhibitory and excitato... GSE325852 Mus musculus	69 samples	counts_table 3.6 MB	Not in ASAP	Details