External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Lineage master regulator and cancer-selective partner transcription factors r... GSE275721 Homo sapiens	72 samples	archive_table 193 MB	Not in ASAP	Details
geo bulk	Faecalibacterium prausnitzii induces an anti-inflammatory response and a meta... GSE285037 Homo sapiens	72 samples	archive_table 213 MB	Not in ASAP	Details
geo bulk	Opposing functions of AEBP2 isoforms fine-tune PRC2 catalytic activity GSE310209 Mus musculus	72 samples	archive_table 3.56 GB	Not in ASAP	Details
geo bulk	UFMylation anchors splicing factors at the ER to reprogram nuclear splicing GSE325905 Arabidopsis thaliana; Mus musculus; Homo sapiens	72 samples	archive_table 4.03 GB	Not in ASAP	Details
geo bulk	Independent cell type-specific expression and distal regulation of the 9p21 l... GSE309515 Homo sapiens	72 samples	archive_table 8.21 GB	Not in ASAP	Details
geo bulk	Epigenetic landscape, key transcriptional regulators, and in vivo identificat... GSE333877 Homo sapiens	72 samples	archive_table 8.27 GB	Not in ASAP	Details
geo bulk	Spliceosomal proteins direct RNA methylation to modulate gene expression and ... GSE300777 Schizosaccharomyces pombe; Homo sapiens	72 samples	archive_table 10 GB	Not in ASAP	Details
geo bulk	Analysis of three-dimensional enhancer network regulated by CTCF in CD4+ T cells GSE243839 Mus musculus	72 samples	archive_table 13.3 GB	Not in ASAP	Details
geo bulk	Soybean Pol IV and V Mutants GSE145759 Glycine max	72 samples	archive_table 13.5 GB	Not in ASAP	Details
geo bulk	Charting the transition from in vitro production through in vivo diversificat... GSE285158 Homo sapiens; Mus musculus	72 samples	archive_table 30.1 GB	Not in ASAP	Details
geo bulk	Multimodal Transcriptomic Profiling of T Cell Responses to Triple-Negative Br... GSE302399 Homo sapiens	73 samples	counts_table 2.58 KB	Not in ASAP	Details
geo bulk	AP2-HS and a GDV1 regulatory feedback loop mediate environmental induction of... GSE298061 Plasmodium falciparum	73 samples	counts_table 688 KB	Not in ASAP	Details
geo bulk	Temporal Transcriptomic Profiling Identifies Core Regulators in Cytokine-Indu... GSE314628 Homo sapiens	73 samples	counts_table 1.97 MB	Not in ASAP	Details
geo bulk	RNA-Seq analysis of tumor and matched normal samples from colorectal cancer ... GSE292858 Homo sapiens	73 samples	counts_table 3.13 MB	Not in ASAP	Details
geo bulk	NSAIDS-XDR-TB clinical trial: A randomized pilot study to estimate the potent... GSE298762 Homo sapiens	73 samples	counts_table 3.54 MB	Not in ASAP	Details
geo bulk	CMS subtypes correlate with complete response in trial of neoadjuvant Galunis... GSE318268 Homo sapiens	73 samples	counts_table 5.06 MB	Not in ASAP	Details
geo bulk	RNA sequencing of nasal lavage samples from mock- and Streptococcus pneumonia... GSE324503 Mus musculus	73 samples	archive_table 12.6 MB	Not in ASAP	Details
geo bulk	Leveraging experimental evolution to extract predictive collateral drug respo... GSE325674 Homo sapiens	73 samples	counts_table 13.4 MB	Not in ASAP	Details
ebi_sc sc	Single cell RNA-seq of isolated human foetal L/M-opsin cone photoreceptor pop... Publication DOI E-MTAB-6058 Homo sapiens	73 cells	h5ad 27 MB	Not in ASAP	Details
geo bulk	RBBP6 orchestrates diabetic endothelial dysfunction viadisrupting JUNB-centri... GSE291636 Homo sapiens; Mus musculus	73 samples	archive_table 6.63 GB	Not in ASAP	Details
geo bulk	Myasthenia thymus reprograms class switched B cells into BAFF dependent survi... GSE324427 Homo sapiens	73 samples	archive_table 9.54 GB	Not in ASAP	Details
geo bulk	GFI1-FOXO1 axis regulate NK cell maturation and function [RNA-seq] GSE278867 Mus musculus	74 samples	counts_table 916 KB	Not in ASAP	Details
geo bulk	Plasma Extracellular Vesicle Modulate Immune Cell Transcriptional Responses F... GSE313527 Homo sapiens	74 samples	counts_table 1.24 MB	Not in ASAP	Details
geo bulk	Simultaneous profiling of native-state proteomes and transcriptomes of neural... GSE287770 Homo sapiens; Mus musculus	74 samples	counts_table 3.62 MB	Not in ASAP	Details
geo bulk	RPL41 stabilizes ribosome dynamics and supports long-protein homeostasis in m... GSE308359 Mus musculus; Homo sapiens	74 samples	counts_table 6.33 MB	Not in ASAP	Details