External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Robust mammalian RNA localization elements are large and multipartite GSE334718 Mus musculus	80 samples	archive_table 12.1 MB	Not in ASAP	Details
geo bulk	Multi-timescale analysis of whole-genome gene expression across the life cycl... GSE301981 Arabidopsis thaliana	80 samples	counts_table 13 MB	Not in ASAP	Details
geo bulk	Aged bone marrow myeloid and mesenchymal cells develop unique senescence phen... GSE294362 Mus musculus	80 samples	archive_table 18.3 MB	Not in ASAP	Details
geo bulk	Control of naive T cell reactivity and peripheral tolerance by ascorbate and ... GSE224376 Mus musculus	80 samples	archive_table 2.67 GB	Not in ASAP	Details
geo bulk	MYOD1L122R induces cancer stem cell pathways to impart chemotherapy and radia... GSE274640 Homo sapiens	80 samples	archive_table 9.67 GB	Not in ASAP	Details
geo bulk	Multi-tier signaling and epigenomic reprogramming drive microglial inflammato... GSE302857 Mus musculus	81 samples	counts_table 1.98 MB	Not in ASAP	Details
geo bulk	The transcriptional repressor Ssn6 modulates phase separation to regulate fun... GSE319560 Candida albicans	81 samples	counts_table 2.85 MB	Not in ASAP	Details
geo bulk	Pseudouridylation of 7SK orchestrates human somatic cell reprogramming into i... GSE310818 Homo sapiens	81 samples	counts_table 7.79 MB	Not in ASAP	Details
geo bulk	Exposure to (+)-anatoxin-a disrupts neurological and neuromuscular developmen... GSE315449 Danio rerio	81 samples	archive_table 8.89 MB	Not in ASAP	Details
geo bulk	The heterogeneity analysis of hepatocellular carcinoma and combined hepatocel... GSE231854 Homo sapiens	81 samples	counts_table 18.7 MB	Not in ASAP	Details
geo bulk	Antigen-restricted Candida albicans Th17 cells link oral-gut immunity and ado... GSE329527 Homo sapiens	81 samples	archive_table 2.08 GB	Not in ASAP	Details
geo bulk	Sustained MYB activity drives emergent enhancer activation and precise enhanc... GSE296242 Homo sapiens; Mus musculus	81 samples	archive_table 13.1 GB	Not in ASAP	Details
geo bulk	PIKfyve-regulated lipid metabolism as a therapeutic vulnerability in neuroend... GSE295392 Homo sapiens	82 samples	counts_table 953 KB	Not in ASAP	Details
geo bulk	Glioblastoma cells imitate neuronal excitability in humans GSE315516 Homo sapiens	82 samples	counts_table 3.74 MB	Not in ASAP	Details
geo bulk	SEX-DEPENDENT TYPE I INTERFERON SIGNALING EXACERBATES ALZHEIMER'S PATHOLOGY GSE304521 Mus musculus	82 samples	counts_table 5.08 MB	Not in ASAP	Details
geo bulk	Tumor Antigen–Independent Targeting of Solid Tumors by Armored 1 Macrophage-D... GSE304568 Mus musculus	82 samples	archive_table 81.7 MB	Not in ASAP	Details
geo bulk	EPB41L4A-AS1 long noncoding RNA acts in both cis- and trans-acting transcript... GSE292272 Homo sapiens	82 samples	archive_table 917 MB	Not in ASAP	Details
geo bulk	Age-associated chromatin reorganization drives overexpression of a novel Btaf... GSE204933 Mus musculus	82 samples	archive_table 13.9 GB	Not in ASAP	Details
geo bulk	DNA methylation stochasticity is linked to transcriptional variability and id... GSE319461 Homo sapiens	82 samples	archive_table 32 GB	Not in ASAP	Details
broad_scp sc	Lymph Nodes are Innervated by a Unique Population of Sensory Neurons with Imm... SCP1187	83 cells x 23'418 genes	counts_table 6.79 MB	Not in ASAP	Details
geo bulk	Unique epigenomic signatures identify biologically significant subtypes of MD... GSE281562 Homo sapiens	83 samples	archive_table 22.8 MB	Not in ASAP	Details
geo bulk	Simultaneous orthogonal cell engineering by a single CRISPR-Cas9 polyfunction... GSE293143 Homo sapiens	84 samples	archive_table 940 KB	Not in ASAP	Details
geo bulk	Spatially organizing million callus cells identify the core-network enable to... GSE293947 Solanum lycopersicum	84 samples	counts_table 1.02 MB	Not in ASAP	Details
geo bulk	Transcriptomic analysis of channel catfish liver response to Aeromonas hydrop... GSE280610 Ictalurus punctatus	84 samples	counts_table 2.06 MB	Not in ASAP	Details
geo bulk	Dissecting the transcriptome of Parkin (PRKN)-linked Parkinson’s disease usin... GSE282152 Homo sapiens	84 samples	counts_table 2.41 MB	Not in ASAP	Details