External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Temporal regulation of human reactive astrocytes reveals their capacity for a... GSE313768 Homo sapiens	115 samples	counts_table 3.09 MB	Not in ASAP	Details
geo bulk	Baseline tumor features and peripheral blood immune dynamics that underlie ef... GSE289582 Homo sapiens	115 samples	counts_table 5.44 MB	Not in ASAP	Details
ebi_sc sc	Tracing pluripotency of human early embryos and embryonic stem cells by singl... Publication DOI E-GEOD-36552 Homo sapiens	115 cells	h5ad 42 MB	Not in ASAP	Details
geo bulk	SORLA upregulation suppresses global pathological effects in aged tauopathy m... GSE278216 Mus musculus	115 samples	archive_table 948 MB	Not in ASAP	Details
geo bulk	FACT maintains nucleosomes around promoters and opposes to the spreading of c... GSE314917 Mus musculus	115 samples	archive_table 12.5 GB	Not in ASAP	Details
geo bulk	Hormone-treatment (ABA, SA) timecourse of Arabidopsis thaliana root GSE331340 Arabidopsis thaliana	116 samples	counts_table 4.43 MB	Not in ASAP	Details
geo bulk	Multi-omic landscape of squamous cell lung cancer GSE289256 Homo sapiens	116 samples	counts_table 5.81 MB	Not in ASAP	Details
geo bulk	Higher basal tumor immune activity coupled with a systemic immune response im... GSE325237 Mus musculus	116 samples	archive_table 202 MB	Not in ASAP	Details
geo bulk	Spatial partitioning of NSD2 deposits H3K36me2 as an active histone mark to p... GSE303603 Mus musculus	116 samples	archive_table 3.56 GB	Not in ASAP	Details
geo bulk	Diminished transcriptional activity and splicing changes drive gene length-bi... GSE282097 Mus musculus	116 samples	archive_table 6.95 GB	Not in ASAP	Details
geo bulk	Dissection of innate-immune-ligand- and interferon-protein-mediated transcrip... GSE330780 Homo sapiens	117 samples	counts_table 9.31 MB	Not in ASAP	Details
ebi_sc sc	Single cell RNA-sequencing of PBMC derived B cells from human healthy donor E-MTAB-6386 Homo sapiens	117 cells	h5ad 15 MB	Not in ASAP	Details
geo bulk	Unique B and plasma cell signature differentiates hidradenitis suppurativa fr... GSE306437 Homo sapiens	118 samples	counts_table 4.27 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNAseq of Human T lymphocyte derived from H7N9 infected patients Publication DOI E-MTAB-6379 Homo sapiens	118 cells	h5ad 17 MB	Not in ASAP	Details
ebi_sc sc	Single-cell transcriptome profiling for metastatic renal cell carcinoma patie... Publication DOI E-CURD-10 Homo sapiens	118 cells	h5ad 33 MB	Not in ASAP	Details
ebi_sc sc	Single cell sequencing of iPSC-dopamine neurons reconstructs disease progress... E-MTAB-7303 Homo sapiens	119 cells	h5ad 17 MB	Not in ASAP	Details
geo bulk	Covalent pan-TEAD inhibitors block YAP activity and demonstrate brain penetra... GSE305224 Homo sapiens	120 samples	counts_table 1.09 MB	Not in ASAP	Details
geo bulk	Multisensory integration at the dawn of land plant evolution GSE284151 Marchantia polymorpha; Arabidopsis thaliana; Ostreococcus tauri; Mesotaenium endlicherianum	120 samples	counts_table 1.92 MB	Not in ASAP	Details
geo bulk	Characterization of the cancer-associated field of injury in the nasal epithe... GSE336399 Homo sapiens	120 samples	counts_table 4.97 MB	Not in ASAP	Details
geo bulk	Human Blood Exposure to Neutron Radiation at Two Irradiation Facilities GSE308422 Homo sapiens	120 samples	counts_table 24.4 MB	Not in ASAP	Details
geo bulk	Comparative toxicogenomic profiling of human epithelial cell lines exposed to... GSE336490 Homo sapiens	120 samples	archive_table 24.4 MB	Not in ASAP	Details
ebi_sc sc	Single-cell transcriptome sequencing from mouse mTECs Publication DOI E-CURD-94 Mus musculus	120 cells	h5ad 27 MB	Not in ASAP	Details
geo bulk	A bifunctional, moonlighting RNA coordinates pathways to regulate human embry... GSE275690 Homo sapiens	120 samples	counts_table 27.7 MB	Not in ASAP	Details
ebi_sc sc	Lineage-dependent spatial and functional organisation of the mammalian enteri... Publication DOI E-MTAB-5553 Mus musculus	120 cells	h5ad 28 MB	Not in ASAP	Details
geo bulk	Multiorgan transcriptomics and circulating extracellular vesicle profiling re... GSE330865 Mus musculus	120 samples	archive_table 274 MB	Not in ASAP	Details