External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Differential transcriptomic response of Atlantic salmon to fermented sunflowe... GSE307205 Salmo salar	120 samples	archive_table 600 MB	Not in ASAP	Details
geo bulk	Decoupling oxidative resilience from reprogramming to rejuvenate the RPE and ... GSE304044 Homo sapiens; Mus musculus	120 samples	archive_table 2.58 GB	Not in ASAP	Details
geo bulk	Rapid disassembly and Piwi-independent reassembly of Drosophila piRNA cluster... GSE234723 Drosophila melanogaster	120 samples	archive_table 12 GB	Not in ASAP	Details
geo bulk	Synthetic transcription factor overrides persistent repressive chromatin marks GSE196619 Homo sapiens	120 samples	archive_table 65.2 GB	Not in ASAP	Details
geo bulk	Sustained Influences of Reactive Oxygen Species and Brassinosteroids on Photo... GSE339330 Triticum aestivum	122 samples	counts_table 27.4 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA-seq of blastomeres from 2- to 32-cell stage mouse embryos Publication DOI E-MTAB-3321 Mus musculus	123 cells	h5ad 34 MB	Not in ASAP	Details
geo bulk	Effects of Trigger-Day hCG Usage on DNA Methylation Alterations GSE315316 Mus musculus	124 samples	archive_table 1.85 GB	Not in ASAP	Details
geo bulk	Patch-seq analysis of dorsal striatum cholinergic interneurons in a mouse mod... GSE328896 Mus musculus	125 samples	counts_table 3.84 MB	Not in ASAP	Details
geo bulk	Cytoplasmic competition between separate parental pronuclei in zygotes GSE231732 Mus musculus	125 samples	counts_table 4.07 MB	Not in ASAP	Details
geo bulk	Airway immune signatures of protection and disease progression in recent huma... GSE328391 Homo sapiens	125 samples	counts_table 14.6 MB	Not in ASAP	Details
geo bulk	Impaired removal of dying brain cells by microglia in GPR34 deficient mice GSE317348 Mus musculus	125 samples	archive_table 164 MB	Not in ASAP	Details
geo bulk	Understanding the regulation of DNMT1 activity using unbiased functional geno... GSE233730 Homo sapiens	125 samples	archive_table 10.6 GB	Not in ASAP	Details
geo bulk	Nuclear Speckles enable processing of RNA from GC-rich Isochores GSE264354 Homo sapiens; Gallus gallus; Pimephales promelas	125 samples	archive_table 11.8 GB	Not in ASAP	Details
geo bulk	Two distinct SWI/SNF complexes direct chromatin-linked transcriptional progra... GSE303610 Toxoplasma gondii	126 samples	counts_table 1.51 MB	Not in ASAP	Details
geo bulk	Blood-based Molecular Endotyping of Fibrotic Hypersensitivity Pneumonitis Ide... GSE318816 Homo sapiens	126 samples	counts_table 3.31 MB	Not in ASAP	Details
geo bulk	Oncogenic KRAS promotes pancreatic ductal adenocarcinoma (PDAC) through post-... GSE239310 Homo sapiens; Mus musculus	126 samples	archive_table 400 MB	Not in ASAP	Details
geo bulk	The placentalia specific histone H3.4 promotes germ cell development and repr... GSE291273 Mus musculus	126 samples	archive_table 2.06 GB	Not in ASAP	Details
geo bulk	ChAHP Silences SINE Retrotransposons by Inhibiting TFIIIB Recruitment. GSE297837 Mus musculus	126 samples	archive_table 22.1 GB	Not in ASAP	Details
geo bulk	Efferocytosis induces proangiogenic function and chromatin remodeling in tumo... GSE300757 Mus musculus	127 samples	archive_table 760 KB	Not in ASAP	Details
geo bulk	Transcriptome and Hormone Regulations Shape Drought Stress-Dependent Fusarium... GSE310570 Hordeum vulgare	128 samples	counts_table 8.21 MB	Not in ASAP	Details
geo bulk	PAR3-mediated coordination of hepatocyte proliferation, maturation, and archi... GSE281035 Mus musculus	128 samples	counts_table 41.9 MB	Not in ASAP	Details
geo bulk	Endogenous retroviruses synthesize heterologous chimeric RNAs to reinforce hu... GSE268270 Homo sapiens	128 samples	archive_table 7.01 GB	Not in ASAP	Details
geo bulk	How the spectral properties of dawns impact Arabidopsis developmental programmes GSE304353 Arabidopsis thaliana	129 samples	counts_table 9.46 MB	Not in ASAP	Details
geo bulk	The airway transcriptome in type2 cytokine biomarker-high and -low severe asthma GSE301357 Homo sapiens	129 samples	counts_table 24.1 MB	Not in ASAP	Details
geo bulk	RNA-Seq of paired diagnosis and relapse AML specimens with healthy controls GSE327386 Homo sapiens	130 samples	counts_table 3.68 MB	Not in ASAP	Details