External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Multiomic profiling of vascular endothelial cell differentiation from human e... GSE201709 Homo sapiens	130 samples	archive_table 946 MB	Not in ASAP	Details
geo bulk	Diploid embryo complementation of embryonic stem cells efficiently generates ... GSE271800 Mus musculus	131 samples	counts_table 3.38 MB	Not in ASAP	Details
geo bulk	Chromatin topology dynamics of dexamethasone-treated trabecular meshwork iden... GSE301525 Homo sapiens	131 samples	archive_table 3.2 GB	Not in ASAP	Details
geo bulk	Revealing differential type I and type II IFN responses in different immune c... GSE306664 Homo sapiens	131 samples	archive_table 4.42 GB	Not in ASAP	Details
geo bulk	The molecular basis for fate determination of nuclear polyadenylated RNA GSE301785 Homo sapiens	131 samples	archive_table 4.94 GB	Not in ASAP	Details
geo bulk	BMAL1 and YAP cooperate to hijack enhancers and promote inflammation in the a... GSE294389 Mus musculus	131 samples	archive_table 17.5 GB	Not in ASAP	Details
geo bulk	Transcriptomic Signatures Associated With Amelioration Of Radiation Induced G... GSE337916 Rattus norvegicus	132 samples	counts_table 2.12 MB	Not in ASAP	Details
geo bulk	Validation of bronchial airway gene expression associated with bronchiectasis... GSE302095 Homo sapiens	132 samples	counts_table 3.52 MB	Not in ASAP	Details
geo bulk	Aberrant mRNA Splicing and Impaired Hippocampal Neurogenesis in Grin2b Mutant... GSE312790 Mus musculus	133 samples	archive_table 2.94 GB	Not in ASAP	Details
hca sc	Spatial transcriptomic profiling of human retinoblastoma Publication DOI 1662accf-0e0c-48c4-9314-5aba063f2220::63569ba9-80f7-4fbf-a78d-bfc0c99d3ec9 Homo sapiens	135 cells	h5 2.1 MB	Not in ASAP	Details
geo bulk	Developmental dynamics of the cortical cellular and molecular landscapes in a... GSE328363 Mus musculus	135 samples	archive_table 18.5 GB	Not in ASAP	Details
geo bulk	In vitro drug screening of RAF/MEK/ERK Inhibitors in combination with Autopha... GSE275078 Homo sapiens	136 samples	counts_table 2.53 MB	Not in ASAP	Details
geo bulk	Effect of ethylene on potato tuber dormancy during postharvest storage GSE289026 Solanum tuberosum	136 samples	counts_table 4.92 MB	Not in ASAP	Details
geo bulk	Transcriptome changes in trigeminal ganglia in the mouse chronic constriction... GSE316925 Mus musculus	136 samples	archive_table 250 MB	Not in ASAP	Details
geo bulk	Brain Mecp2 Genetic Dosage and Gene Therapy Shape Multi-omics Signatures and ... GSE300534 Mus musculus	137 samples	counts_table 997 Bytes	Not in ASAP	Details
geo bulk	Multimodal perspectives on the upper layer neurogenesis in the murine cerebra... GSE248250 Mus musculus	137 samples	counts_table 3.86 MB	Not in ASAP	Details
geo bulk	A contamination-adjusted tissue thrombopoietic framework identifies a clinica... GSE329380 Homo sapiens	137 samples	counts_table 8.11 MB	Not in ASAP	Details
geo bulk	Brain Mecp2 Genetic Dosage and Gene Therapy Shape Multi-omics Signatures and ... GSE300536 Mus musculus	137 samples	counts_table 11.1 MB	Not in ASAP	Details
geo bulk	Systematic identification of age-related microbiome metabolites that impact t... GSE341168 Homo sapiens	138 samples	archive_table 9.85 GB	Not in ASAP	Details
geo bulk	Systematic investigation reveals extensive Epstein-Barr virus transcriptional... GSE303389 Homo sapiens	139 samples	archive_table 22.7 GB	Not in ASAP	Details
geo bulk	Effect of DSX knock down by RNA intereference on sex-bias gene expression at ... GSE260734 Nasonia vitripennis	140 samples	counts_table 3.4 MB	Not in ASAP	Details
geo bulk	Reference-guided genome assembly of long non-coding RNA transcripts reveals t... GSE317503 Homo sapiens	140 samples	counts_table 17.4 MB	Not in ASAP	Details
ebi_sc sc	Single cell RNA sequencing of murine basophil/mast cell progenitors and granu... Publication DOI E-GEOD-106973 Mus musculus	140 cells	h5ad 24 MB	Not in ASAP	Details
geo bulk	Mild SARS-CoV-2 maternal infection in mice induces transient offspring neurod... GSE317803 Mus musculus	140 samples	archive_table 285 MB	Not in ASAP	Details
geo bulk	Promoter mutagenesis and a massively parallel reporter screen of the MAPT loc... GSE325670 Homo sapiens	140 samples	archive_table 892 MB	Not in ASAP	Details