External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Skeletal muscle reprogramming of metabolic, ribosomal and developmental pathw... GSE343068 Homo sapiens	140 samples	archive_table 1010 MB	Not in ASAP	Details
geo bulk	Deconvolution of regulatory T cell heterogeneity identifies cycling precursor... GSE253587 Homo sapiens; Rattus norvegicus	140 samples	archive_table 2.44 GB	Not in ASAP	Details
geo bulk	Inhibition of METTL3 by STC-15 induces RNA misprocessing that results in dsRN... GSE312944 Homo sapiens; Mus musculus	140 samples	archive_table 34.8 GB	Not in ASAP	Details
geo bulk	Toxicological assessment of microplastic exposure on Rats GSE303044 Rattus norvegicus	141 samples	counts_table 1.86 MB	Not in ASAP	Details
geo bulk	Inducible fusion with the CHASERR long noncoding RNA transcript upregulates h... GSE298095 Homo sapiens; Mus musculus	141 samples	archive_table 11.5 GB	Not in ASAP	Details
geo bulk	Cell autonomous regional differences in oligodendrocyte precursor cell develo... GSE290816 Mus musculus	142 samples	archive_table 265 MB	Not in ASAP	Details
geo bulk	The critical role of the host endogenous immune compartment after intracerebr... GSE296419 Homo sapiens	143 samples	counts_table 570 KB	Not in ASAP	Details
geo bulk	Transcriptional profiling of striatum from a zQ175 KI mouse model of Huntingt... GSE284497 Mus musculus	143 samples	counts_table 5.89 MB	Not in ASAP	Details
geo bulk	Acute intervention reveals critical roles of BAF, KMT2D and p300 in MyoD bind... GSE290849 Mus musculus	143 samples	archive_table 585 MB	Not in ASAP	Details
geo bulk	Effect of calcium oxalate microcrystals on kidney proximal tubule epithelial ... GSE302560 Homo sapiens	144 samples	counts_table 5.65 MB	Not in ASAP	Details
ebi_sc sc	Single cell RNA-seq of human LNCaP prostate carcinoma cells cultured in the a... Publication DOI E-GEOD-99795 Homo sapiens	144 cells	h5ad 37 MB	Not in ASAP	Details
geo bulk	Attention-based deep learning for analysis of pathology images and gene expre... GSE320381 Homo sapiens	145 samples	counts_table 2.05 MB	Not in ASAP	Details
geo bulk	eIF4G2-mediated Translation Initiation of Histone Modifiers is Essential for ... GSE318069 Mus musculus	145 samples	archive_table 1.78 GB	Not in ASAP	Details
cellxgene sc	Healthy human liver: B cells Publication DOI 0895c838-e550-48a3-a777-dbcd35d30272 Homo sapiens	146 cells x 32'596 genes	h5ad 5.13 MB	Not in ASAP	Details
geo bulk	Gene expression in patients with pulmonary hypertension due to valve heart di... GSE325715 Homo sapiens	146 samples	counts_table 14.7 MB	Not in ASAP	Details
geo bulk	A standardized patient-derived glioblastoma organoid platform for evaluating ... GSE300985 Homo sapiens	147 samples	counts_table 29.5 MB	Not in ASAP	Details
hca sc	Spatial transcriptomic profiling of human retinoblastoma Publication DOI 1662accf-0e0c-48c4-9314-5aba063f2220::0083c688-ef4c-4baf-81e8-2d5d8774a162 Homo sapiens	148 cells	h5 1.06 MB	Not in ASAP	Details
geo bulk	Mitochondrial OXPHOS restricts SARS-CoV-2 replication GSE325454 Homo sapiens	148 samples	counts_table 5.46 MB	Not in ASAP	Details
geo bulk	Covalent pan-TEAD inhibitors block YAP activity and demonstrate brain penetra... GSE305227 Homo sapiens	149 samples	counts_table 990 KB	Not in ASAP	Details
geo bulk	Sorted bulk RNA-seq profiling of human peripheral blood mononuclear cell popu... GSE327707 Homo sapiens	150 samples	counts_table 2.96 MB	Not in ASAP	Details
geo bulk	The Rpd3 histone deacetylase is critical for temperature-mediated morphogenes... GSE316691 Histoplasma ohiense	150 samples	archive_table 18 MB	Not in ASAP	Details
geo bulk	Epigenomic profiles of SLE resting and transitional B cells GSE263717 Homo sapiens	150 samples	archive_table 22.5 GB	Not in ASAP	Details
geo bulk	Mouse Offspring Conceived by In Vitro Fertilization Exhibit Accelerated Repro... GSE307881 Mus musculus	151 samples	counts_table 447 KB	Not in ASAP	Details
geo bulk	Unraveling Novel Drug candidate for ALS through an Integrative Network Analys... GSE261648 Homo sapiens	151 samples	archive_table 10.8 MB	Not in ASAP	Details
geo bulk	Cytoplasmic competition between separate parental pronuclei in zygotes GSE279786 Mus musculus	151 samples	archive_table 708 MB	Not in ASAP	Details