External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
ebi_sc sc	Single cell RNA-seq of bone marrow biopsies of a multiple myeloma patient Publication DOI E-GEOD-110499 Homo sapiens	168 cells	h5ad 30 MB	Not in ASAP	Details
geo bulk	Histone acetylation-dependent clustering of BRD2 instructs transcription dyna... GSE271982 Mus musculus	168 samples	archive_table 11.2 GB	Not in ASAP	Details
geo bulk	Vascular invasion-associated gene expression is detectable in pre-surgical bi... GSE273377 Homo sapiens	169 samples	counts_table 7.55 MB	Not in ASAP	Details
geo bulk	BET inhibition synergizes with Golcadomide by suppressing MYC and E2F pathway... GSE305382 Homo sapiens	169 samples	archive_table 113 MB	Not in ASAP	Details
geo bulk	RNA sequencing of C. auris and C. albicans under different conditions GSE255158 Candidozyma auris; Candida albicans	171 samples	counts_table 101 KB	Not in ASAP	Details
geo bulk	Interrogating the mechanistic link between neighborhood deprivation and color... GSE319878 Homo sapiens	171 samples	counts_table 6.56 MB	Not in ASAP	Details
ebi_sc sc	Single cell transcriptomics of mixed asexual and sexual blood stage parasites... Publication DOI E-ENAD-16 Plasmodium berghei	171 cells	h5ad 6.6 MB	Not in ASAP	Details
geo bulk	NMuMG PBRM1 RNA-seq, ATAC-seq, and ChIP-seq GSE312302 Mus musculus	171 samples	archive_table 9.66 GB	Not in ASAP	Details
geo bulk	Cross-tissue reveals metabolic reprogramming of Tibetan tea in mice GSE263214 Mus musculus	172 samples	counts_table 6.01 MB	Not in ASAP	Details
geo bulk	CTCF tunes gene expression in a loop-dependent and -independent manner GSE275003 Mus musculus	172 samples	archive_table 13.8 GB	Not in ASAP	Details
geo bulk	SOX9-BAF multi-omics profiling in human colon cancer cell models GSE335210 Homo sapiens	173 samples	archive_table 15.2 GB	Not in ASAP	Details
geo bulk	Th2-primed innate immune amplification defines a distinct atopic dermatitis e... GSE330551 Homo sapiens	174 samples	counts_table 71.7 MB	Not in ASAP	Details
geo bulk	H3K9 di-methylation dynamics underlies mouse minor zygotic genome activation GSE296994 Mus musculus	174 samples	archive_table 525 MB	Not in ASAP	Details
geo bulk	PHIP suppresses NuRD to enable the growth of SWI/SNF-mutant cancers GSE315219 Homo sapiens	174 samples	archive_table 124 GB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA sequencing of lung adenocarcinoma patient-derived cells Publication DOI E-CURD-11 Homo sapiens	176 cells	h5ad 51 MB	Not in ASAP	Details
geo bulk	Archetype analysis of lung adenocarcinoma premalignancy links heterogeneity i... GSE319666 Homo sapiens	177 samples	counts_table 7.31 MB	Not in ASAP	Details
geo bulk	Unbalanced chromatin binding of Polycomb complexes drives neurodevelopmental ... GSE312574 Homo sapiens; Mus musculus	179 samples	archive_table 22.8 GB	Not in ASAP	Details
geo bulk	Electric Field-Induced Release and Measurement Liquid Biopsy of Urinary Trans... GSE286453 Homo sapiens	180 samples	counts_table 1.03 MB	Not in ASAP	Details
geo bulk	Srrm2 haploinsufficiency drives SynGAP-γ reduction, Agap3 mis-splicing, and o... GSE299937 Mus musculus	180 samples	counts_table 6.39 MB	Not in ASAP	Details
geo bulk	Overcoming intrinsic mechanisms of cell cycle inhibitor resistance in estroge... GSE284956 Homo sapiens	180 samples	counts_table 15.1 MB	Not in ASAP	Details
geo bulk	A Phase II Trial of Pembrolizumab plus Granulocyte Macrophage Colony Stimulat... GSE317606 Homo sapiens	180 samples	archive_table 718 MB	Not in ASAP	Details
geo bulk	RFX5 as a regulator of spatial chromatin contacts and gene expression GSE305795 Homo sapiens	180 samples	archive_table 40.1 GB	Not in ASAP	Details
geo bulk	Cohesin mutations suppress HLA class II gene expression to promote immune eva... GSE314941 Homo sapiens	180 samples	archive_table 56.8 GB	Not in ASAP	Details
geo bulk	RNA Sequencing of Liver Samples from UM-HET3 Mice Exposed to Various Compound... GSE292884 Mus musculus	182 samples	counts_table 4.05 MB	Not in ASAP	Details
ebi_sc sc	Single cell RNA-sequencing of E8.5 stage embryonic neural tissue from mouse Publication DOI E-MTAB-6912 Mus musculus	182 cells	h5ad 30 MB	Not in ASAP	Details