External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Sirtuin 7 regulates dosage compensation and safeguards the female X-chromosome GSE256287 Mus musculus	182 samples	archive_table 25.6 GB	Not in ASAP	Details
geo bulk	Obesity Promotes Lung Carcinogenesis Through Airway Immune Dysfunction GSE336982 Homo sapiens	183 samples	counts_table 7.46 MB	Not in ASAP	Details
geo bulk	Spatial Transcriptomic Landscape of Invasion Patterns in Human Papillomavirus... GSE316098 Homo sapiens	186 samples	counts_table 4.04 MB	Not in ASAP	Details
geo bulk	MYC binding to nascent RNA suppresses innate immune signaling by R-loop-deriv... GSE281781 Homo sapiens; Mus musculus	186 samples	archive_table 11.7 GB	Not in ASAP	Details
geo bulk	Systemic and breast chronic inflammation and hormone disposition promote a tu... GSE276760 Rattus norvegicus; Homo sapiens	187 samples	archive_table 596 MB	Not in ASAP	Details
geo bulk	Adaptive immune responses to vaccination reflect social status at first expos... GSE318613 Macaca mulatta	188 samples	counts_table 3.73 MB	Not in ASAP	Details
geo bulk	Multi-omics data analysis for the JGOG3025-TR1 ovarian clear cell carcinoma c... GSE307292 Homo sapiens	189 samples	counts_table 9.52 MB	Not in ASAP	Details
geo bulk	Patient-derived organoid – immune cell co-culture platform for therapeutics d... GSE307568 Homo sapiens	189 samples	counts_table 10.5 MB	Not in ASAP	Details
geo bulk	Dynamic gene expression analysis reveals distinct severity phases of immune a... GSE264443 Homo sapiens	189 samples	archive_table 38.2 MB	Not in ASAP	Details
geo bulk	Vaccination elicits HIV broadly neutralizing antibodies in primates GSE326649 Macaca mulatta	189 samples	archive_table 50.6 MB	Not in ASAP	Details
geo bulk	SenCat: Redefining human cell senescence through multiomic profiling of multi... GSE284666 Homo sapiens	190 samples	archive_table 39.9 MB	Not in ASAP	Details
geo bulk	Inhibition of p300/CREBBP catalytic activity drives context-dependent transcr... GSE305384 Homo sapiens	190 samples	archive_table 18.7 GB	Not in ASAP	Details
geo bulk	Systematic Perturbation of Cultures of K. Phaffii Show Gene Signatures Associ... GSE302182 Komagataella phaffii	191 samples	counts_table 5.08 MB	Not in ASAP	Details
geo bulk	Systematic Perturbation of Cultures of K. Phaffii Show Gene Signatures Associ... GSE302181 Komagataella phaffii	192 samples	counts_table 5.07 MB	Not in ASAP	Details
geo bulk	Transcriptional profiling of hippocampus from a zQ175 KI mouse model of Hunti... GSE284500 Mus musculus	192 samples	counts_table 6.19 MB	Not in ASAP	Details
ebi_sc sc	Single cell RNA-seq of a human ex vivo ovarian model with matched stromal cells Publication DOI E-MTAB-7249 Homo sapiens	192 cells	h5ad 31 MB	Not in ASAP	Details
geo bulk	Multi-omic profiling of DNA damage-induced senescence in healthy and IPF prim... GSE328392 Homo sapiens	192 samples	archive_table 527 MB	Not in ASAP	Details
geo bulk	Deciphering sepsis molecular subtypes using large-scale data to identify subt... GSE310929 Homo sapiens	193 samples	counts_table 286 MB	Not in ASAP	Details
geo bulk	Mega-Enhancers Compartmentalize Transcriptionally Active Long Genes in the Brain GSE339045 Mus musculus	193 samples	archive_table 437 MB	Not in ASAP	Details
geo bulk	Crnic Institute Human Trisome Project - Tofacitinib for Immune Skin Condition... GSE330188 Homo sapiens	194 samples	counts_table 45.9 MB	Not in ASAP	Details
geo bulk	Stratifying IVF population endometria using a prognosis gradient independent ... GSE283409 Homo sapiens	195 samples	counts_table 4.71 MB	Not in ASAP	Details
ebi_sc sc	Malaria Cell Atlas: Single cell transcriptomics of malaria parasites Publication DOI E-CURD-2 Plasmodium berghei	196 cells	h5ad 6.6 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA sequencing of marmoset embryonic development Publication DOI E-MTAB-7078 Callithrix jacchus	196 cells	h5ad 45 MB	Not in ASAP	Details
geo bulk	High throughput sequencing data for Oryza sativa, Chlamydomonas reinhardtii, ... GSE266911 Chlamydomonas reinhardtii; Oryza sativa; Physcomitrium patens	196 samples	archive_table 11 GB	Not in ASAP	Details
geo bulk	Atlas of gene expression in the Murciano-Granadina goat GSE337251 Capra hircus	198 samples	counts_table 19.8 MB	Not in ASAP	Details