External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Bulk RNA-seq of mouse brain following closed head injury: role of IL-1R1 sign... GSE326452 Mus musculus	200 samples	counts_table 9.36 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA-seq of motor neuron progenitors differentiated from mouse emb... Publication DOI E-MTAB-5466 Mus musculus	201 cells	h5ad 39 MB	Not in ASAP	Details
geo bulk	Diurnal Temperature Fluctuation Impact on Transcriptomic Profile in V. vinife... GSE337151 Vitis vinifera	204 samples	counts_table 6.85 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA-seq of mouse CD4+ T-helper 2 cells from mediastinal lymph nod... Publication DOI E-MTAB-4619 Mus musculus	205 cells	h5ad 15 MB	Not in ASAP	Details
ebi_sc sc	Single-cell sequencing of stage 4 chicken embryos Publication DOI E-GEOD-89910 Gallus gallus	205 cells	h5ad 27 MB	Not in ASAP	Details
geo bulk	Paradoxical Phenotype of Fibromyalgia Neutrophils: Elevated Baseline Inflamma... GSE334369 Homo sapiens	206 samples	archive_table 76.6 MB	Not in ASAP	Details
geo bulk	Transcriptomic profiling of morphine and LPS exposure across mouse brain regions GSE332798 Mus musculus	208 samples	counts_table 1.58 MB	Not in ASAP	Details
geo bulk	Clonal memory of cell division diverges between human healthy haematopoiesis ... GSE300913 Homo sapiens	209 samples	archive_table 2.51 MB	Not in ASAP	Details
geo bulk	Semaglutide and exercise synergy in obesity: preserving muscle mass and unco... GSE304862 Mus musculus	209 samples	counts_table 6.21 MB	Not in ASAP	Details
ebi_sc sc	Single cell RNA seq of influenza tetramer specific CD8+ T cells from baseline... Publication DOI E-MTAB-7606 Homo sapiens	209 cells	h5ad 15 MB	Not in ASAP	Details
geo bulk	Mutual Antagonism Between PRC1 Condensates and SWI/SNF in Chromatin Regulation GSE301505 Homo sapiens	210 samples	counts_table 4.14 MB	Not in ASAP	Details
geo bulk	Transcriptomic Hallmarks of Mortality Reveal Universal and Specific Mechanism... GSE292885 Mus musculus	210 samples	archive_table 341 MB	Not in ASAP	Details
geo bulk	Immunosuppressive monocytes are enriched in hepatocellular carcinoma patients... GSE318420 Homo sapiens	210 samples	archive_table 2.42 GB	Not in ASAP	Details
ebi_sc sc	Intrinsic transcriptional heterogeneity in B cells controls early class switc... Publication DOI E-MTAB-4825 Mus musculus	213 cells	h5ad 25 MB	Not in ASAP	Details
geo bulk	Bulk RNA-seq of juvenile mouse liver following NDMA or saline treatment in WT... GSE332646 Mus musculus	214 samples	counts_table 5.76 MB	Not in ASAP	Details
geo bulk	Role of Cancer-Associated Fibroblasts in Prognostic Stratification of Advance... GSE275647 Homo sapiens	216 samples	counts_table 8.92 MB	Not in ASAP	Details
geo bulk	Multi-omic profiling of DNA damage-induced senescence in healthy and IPF prim... GSE328437 Homo sapiens	216 samples	archive_table 579 MB	Not in ASAP	Details
geo bulk	Immune-microbiome coordination defines interferon setpoints in healthy humans GSE314923 Homo sapiens	216 samples	archive_table 1.24 GB	Not in ASAP	Details
geo bulk	Cell autonomous regional differences in oligodendrocyte precursor cell develo... GSE310482 Mus musculus	217 samples	archive_table 11.1 GB	Not in ASAP	Details
geo bulk	Systematic investigation reveals extensive Epstein-Barr virus transcriptional... GSE303478 Homo sapiens	217 samples	archive_table 51.1 GB	Not in ASAP	Details
geo bulk	Development of an Optimized Epigenetic Silencer to Transcriptionally Inactiva... GSE318225 Homo sapiens	218 samples	archive_table 340 MB	Not in ASAP	Details
ebi_sc sc	Single-cell transcriptomes of each cell of the C. elegans embryo until the 16... Publication DOI E-GEOD-77944 Caenorhabditis elegans	219 cells	h5ad 22 MB	Not in ASAP	Details
geo bulk	Divergent medulloblastoma chromatin states disclose KDM2B as a selective depe... GSE270126 Homo sapiens	219 samples	archive_table 36.8 GB	Not in ASAP	Details
geo bulk	RNA Polymerase II Transcriptional Pausing and Release Regulates Circadian Tra... GSE287141 Mus musculus	219 samples	archive_table 42.5 GB	Not in ASAP	Details
geo bulk	Vascular invasion-associated gene expression is detectable in pre-surgical bi... GSE273528 Homo sapiens	221 samples	archive_table 691 MB	Not in ASAP	Details