External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
ebi_sc sc	Single cell RNA expression of mouse embryonic basal forebrain Publication DOI E-GEOD-94641 Mus musculus	225 cells	h5ad 41 MB	Not in ASAP	Details
geo bulk	Dual Immune Checkpoint Blockade Induces Distinct Systemic and Intratumoral Im... GSE318645 Homo sapiens	226 samples	counts_table 2.81 MB	Not in ASAP	Details
geo bulk	Gene expression profiles from multimodal patch-seq neuron samples of the pig ... GSE263466 Sus scrofa	226 samples	counts_table 15 MB	Not in ASAP	Details
ebi_sc sc	Single cell RNA-seq of three human melanoma cell lines: Ma-Mel-123, Ma-Mel-10... Publication DOI E-GEOD-81383 Homo sapiens	226 cells	h5ad 47 MB	Not in ASAP	Details
geo bulk	Monocyte-derived IL-10 drives sex differences in pain duration GSE316149 Homo sapiens	227 samples	counts_table 12.3 MB	Not in ASAP	Details
geo bulk	Molecular phenotyping of diverse human skeletal muscles with CAGE-Seq GSE310878 Homo sapiens	228 samples	counts_table 8.21 MB	Not in ASAP	Details
geo bulk	Female iPSC X-chromosome inactivation (XCI) erosion and its transcriptomic ef... GSE322198 Homo sapiens	228 samples	counts_table 8.82 MB	Not in ASAP	Details
cellxgene sc	Diaphragm Publication DOI 6b8b0913-2d87-49b5-89f8-ac8f8d27b92b Microcebus murinus	231 cells x 16'400 genes	h5ad 7.69 MB	ASAP122	Details
geo bulk	DNA damage drives a unique, Alzheimer’s disease-relevant senescent state in n... GSE329677 Homo sapiens	231 samples	counts_table 15.5 MB	Not in ASAP	Details
geo bulk	SenCat: Redefining human cell senescence GSE285826 Homo sapiens; Mus musculus	232 samples	archive_table 1.89 GB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA-seq analysis of LPS- and palmitate-stimulated THP-1 macrophages Publication DOI E-MTAB-6075 Homo sapiens	236 cells	h5ad 52 MB	Not in ASAP	Details
geo bulk	Pancreatic Cancer Datasets GSE161369 Homo sapiens	237 samples	archive_table 33 GB	Not in ASAP	Details
geo bulk	Insulin modulates mPFC gene expression and emotional behavior in a sex-specif... GSE295966 Rattus norvegicus	238 samples	counts_table 2.32 MB	Not in ASAP	Details
geo bulk	Cutaneous adipose tissue has a strong inflammatory signature in psoriasis pat... GSE287022 Homo sapiens	241 samples	counts_table 10.2 MB	Not in ASAP	Details
ebi_sc sc	Single Cell Sequencing Reveals Gene Expression Signatures Associated with Bon... Publication DOI E-GEOD-124858 Homo sapiens	241 cells	h5ad 50 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA-seq analysis of kidney marrow from six zebrafish transgenic l... Publication DOI E-GEOD-100911 Danio rerio	245 cells	h5ad 21 MB	Not in ASAP	Details
geo bulk	Transcriptional activity during seed imbibition is conserved, robust and requ... GSE297302 Arabidopsis thaliana; Brassica napus	245 samples	archive_table 2.6 GB	Not in ASAP	Details
geo bulk	Pharmacological inhibition of FKBP51 mitigates early life adversity-induced s... GSE318028 Mus musculus	246 samples	counts_table 12.1 MB	Not in ASAP	Details
ebi_sc sc	Single cell RNA-seq of mouse brain astrocyte transcriptomes Publication DOI E-GEOD-99058 Mus musculus	250 cells	h5ad 29 MB	Not in ASAP	Details
geo bulk	Comparative Immunotoxicity and Transcriptomic Profiling of Seven PFAS in THP-... GSE313992 Homo sapiens	252 samples	counts_table 9.57 MB	Not in ASAP	Details
geo bulk	Lesion-remote astrocytes govern microglia-mediated white matter repair GSE312911 Mus musculus	256 samples	archive_table 3.47 GB	Not in ASAP	Details
geo bulk	IRF2 is an Essential Transcription Factor with Pathogenic and Prognostic Impa... GSE302052 Homo sapiens	257 samples	counts_table 1.95 MB	Not in ASAP	Details
geo bulk	Targeted citrullination enables p53 binding to non-canonical sites GSE288344 Homo sapiens; Mus musculus	258 samples	archive_table 31 GB	Not in ASAP	Details
geo bulk	Pig dorsal root ganglion neurons GSE263532 Sus scrofa	259 samples	archive_table 18 GB	Not in ASAP	Details
geo bulk	ALS molecular subtypes are a combination of cellular, genetic, and pathologic... GSE308462 Homo sapiens	260 samples	counts_table 10 MB	Not in ASAP	Details