External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	A temperature increase induces Atf1/Pcr1-dependent rapid depletion of histone... GSE265755 Schizosaccharomyces pombe	261 samples	archive_table 1.45 GB	Not in ASAP	Details
geo bulk	Reciprocal genetic screens identify epigenetics factors controlling epidermal... GSE276632 Mus musculus	262 samples	archive_table 107 MB	Not in ASAP	Details
geo bulk	Influence of NIPBL Knockdown-Induced Alterations in Cohesin Loop Extrusion on... GSE288172 Homo sapiens	263 samples	archive_table 18.6 GB	Not in ASAP	Details
cellxgene sc	Single-cell atlas of 24 hormone therapy naive localised prostate cancers -- C... Publication DOI 04557650-a691-4306-a56c-232fbfeb236c Homo sapiens	268 cells x 32'397 genes	h5ad 10.8 MB	Not in ASAP	Details
geo bulk	High-Fat Diet Causes Rapid Loss of Intestinal Group 3 Innate Lymphoid Cells T... GSE317764 Homo sapiens; Mus musculus	270 samples	counts_table 2.34 MB	Not in ASAP	Details
geo bulk	Deciphering the Transcriptomic Signatures of Aging Across Organs in Mice GSE291420 Mus musculus	270 samples	counts_table 6.17 MB	Not in ASAP	Details
ebi_sc sc	Ontogenic changes in hematopoietic hierarchy determine pediatric specificity ... Publication DOI E-MTAB-8360 Mus musculus	273 cells	h5ad 38 MB	Not in ASAP	Details
geo bulk	Next-GenerationPediatric Cancer Models: Patient-Matched Orthotopic Xenografts... GSE318841 Homo sapiens	277 samples	archive_table 192 MB	Not in ASAP	Details
geo bulk	Intrinsically disordered regions restrain genomic targeting of RNA and histon... GSE287841 Arabidopsis thaliana; Mus musculus	277 samples	archive_table 10.1 GB	Not in ASAP	Details
geo bulk	Age-related transcriptomic differences in peripheral blood of adolescents wit... GSE255685 Homo sapiens	279 samples	archive_table 151 MB	Not in ASAP	Details
geo bulk	Rb-driven transcription limits its tumour suppressive effects in breast cancer GSE303576 Homo sapiens	279 samples	archive_table 9.74 GB	Not in ASAP	Details
ebi_sc sc	Deciphering the relationship between polycomb repression and stochastic gene ... Publication DOI E-MTAB-5661 Mus musculus	280 cells	h5ad 54 MB	Not in ASAP	Details
ebi_sc sc	Gene expression pattern of single mES cells during cell cycle stages Publication DOI E-MTAB-2805 Mus musculus	280 cells	h5ad 59 MB	Not in ASAP	Details
geo bulk	mTOR signaling contributes to system-driven rhythmic gene expression in mouse... GSE301899 Mus musculus	282 samples	counts_table 18.9 MB	Not in ASAP	Details
ebi_sc sc	scRNA-seq of mouse adipose stem and progenitor cells Publication DOI E-MTAB-5802 Mus musculus	286 cells	h5ad 43 MB	Not in ASAP	Details
geo bulk	Temporal Uncoupling of Radial Glial Progenitor Cell Lineage Progression in Se... GSE327468 Mus musculus	287 samples	counts_table 3.58 MB	Not in ASAP	Details
ebi_sc sc	Single cell RNA sequencing of putative AIRE+ dendritic cells from human paedi... Publication DOI E-MTAB-7381 Homo sapiens	287 cells	h5ad 30 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA-seq of mouse endothelial cells from three distinct embryonic ... Publication DOI E-MTAB-6970 Mus musculus	287 cells	h5ad 43 MB	Not in ASAP	Details
geo bulk	A spatial code governs olfactory receptor choice and aligns sensory maps in t... GSE297068 synthetic construct; Mus musculus	291 samples	archive_table 37.5 GB	Not in ASAP	Details
geo bulk	Temporal Uncoupling of Radial Glial Progenitor Cell Lineage Progression in Se... GSE327470 Mus musculus	292 samples	archive_table 830 MB	Not in ASAP	Details
geo bulk	SETDB1/HUSH modulates Xist RNA levels during establishment of X chromosome in... GSE309424 Mus musculus	292 samples	archive_table 4.61 GB	Not in ASAP	Details
geo bulk	Persistent dopamine-dependent remodeling of the neural transcriptome in respo... GSE289991 Mus musculus; Homo sapiens	294 samples	counts_table 1.08 MB	Not in ASAP	Details
geo bulk	Gene expression profiles of cardiac neural crest cells during heart development GSE201417 Mus musculus	294 samples	counts_table 2.66 MB	Not in ASAP	Details
geo bulk	Evolutionarily divergent transcriptomic programs in ovarian folliculogenesis ... GSE290074 Homo sapiens	297 samples	archive_table 114 MB	Not in ASAP	Details
geo bulk	Covalent pan-TEAD inhibitors block YAP activity and demonstrate brain penetra... GSE305254 Homo sapiens	299 samples	archive_table 131 MB	Not in ASAP	Details