External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	DNA methylation profiling identifies long-range epigenetic silencing of clust... GSE304097 Homo sapiens	299 samples	archive_table 4.13 GB	Not in ASAP	Details
geo bulk	Spatial and cell type specific molecular genetic investigations of inflammato... GSE331197 Homo sapiens	300 samples	counts_table 2.32 MB	Not in ASAP	Details
geo bulk	Embryonic stem cell factors DPPA2/4 amplify active H3K4me3-H2AK119ub chromati... GSE310173 Homo sapiens	300 samples	archive_table 42.2 GB	Not in ASAP	Details
cellxgene sc	SstChodl - neocortex: Human variation study (HVS) Publication DOI 149b2c3f-ee11-47a7-984b-923570280bd7 Homo sapiens	301 cells x 18'736 genes	h5ad 31.3 MB	Not in ASAP	Details
geo bulk	Spatial and cell type specific molecular genetic investigations of inflammato... GSE330891 Homo sapiens	301 samples	counts_table 2.33 MB	Not in ASAP	Details
broad_scp sc	Th17 Pathogenicity Publication DOI SCP8	302 cells x 4'281 genes	counts_table 7.52 MB	Not in ASAP	Details
geo bulk	Localized PD-1 CAR T therapy reprograms neuroinflammation - mouse CAR T data. GSE327494 Mus musculus	302 samples	archive_table 249 MB	Not in ASAP	Details
geo bulk	Bulk RNA-seq of Genetically Diverse Triple-Negative Breast Cancer Mouse Model... GSE304115 Mus musculus	309 samples	counts_table 54.5 MB	Not in ASAP	Details
geo bulk	Evolutionarily divergent transcriptomic programs in ovarian folliculogenesis ... GSE290087 Macaca fascicularis	309 samples	archive_table 86.8 MB	Not in ASAP	Details
geo bulk	Placental gene co-expression networks and mediation analysis identifies pathw... GSE325907 Homo sapiens	319 samples	counts_table 16.6 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA sequencing of mouse embryonic stem cells expressing 2-cell st... Publication DOI E-MTAB-5058 Mus musculus	319 cells	h5ad 52 MB	Not in ASAP	Details
ebi_sc sc	Single cell RNA-seq of a primary model of HIV latency and CD4+ T cells isolat... Publication DOI E-GEOD-111727 Homo sapiens	320 cells	h5ad 47 MB	Not in ASAP	Details
geo bulk	SWI/SNF Remodeling Complexes Regulate 3D Chromatin Architecture by Antagonizi... GSE294051 Drosophila melanogaster; Mus musculus; Homo sapiens	321 samples	archive_table 23.6 GB	Not in ASAP	Details
geo bulk	LSD1 inhibitor, TAS1440, disrupts INSM1-LSD1 complex activating tumor-suppres... GSE272002 Homo sapiens	324 samples	archive_table 33.8 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA-seq of mouse embryonic stem cells to study the genomic encodi... E-MTAB-6362 Mus musculus	327 cells	h5ad 56 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA-seq of human H9 cells undergoing definitive endoderm differen... Publication DOI E-GEOD-109979 Homo sapiens	329 cells	h5ad 82 MB	Not in ASAP	Details
ebi_sc sc	Single cell RNA-sequencing of induced Neural Plate Border Stem Cells Publication DOI E-MTAB-6911 Homo sapiens	330 cells	h5ad 49 MB	Not in ASAP	Details
geo bulk	Application of Transcriptomics Dose-Response Modeling to Risk-Based Prioritiz... GSE269503 Pimephales promelas	338 samples	counts_table 73.8 KB	Not in ASAP	Details
geo bulk	Sex-related differences in gene expression contribute to recurrence in the po... GSE344060 Homo sapiens	339 samples	counts_table 9.9 MB	Not in ASAP	Details
geo bulk	Molecular characterization of flower bud dormancy under constrained temperatures GSE301282 Prunus avium	340 samples	archive_table 61.1 MB	Not in ASAP	Details
geo bulk	Native American ancestry-enriched eQTLs regulate HER2 amplicon genes and are ... GSE343732 Homo sapiens	345 samples	archive_table 62.7 MB	Not in ASAP	Details
geo bulk	Minimizing far-extending chromatin perturbation in genome editing preserves ... GSE320162 Homo sapiens; Mus musculus	347 samples	counts_table 965 KB	Not in ASAP	Details
geo bulk	Western diet-induced MASH in PWK/PhJ mice identifies disruptions in amino aci... GSE309251 Mus musculus	347 samples	counts_table 3.83 MB	Not in ASAP	Details
geo bulk	PU.1-Activated Genomic Regions Define Low-risk MDS Subsets Characterized by I... GSE298019 Homo sapiens	357 samples	counts_table 8.6 MB	Not in ASAP	Details
geo bulk	Dichlorobenzene Mouse S1500+ GSE333831 Mus musculus	360 samples	counts_table 1.67 MB	Not in ASAP	Details